Possibility of factorization for ODEs produced by a mass action chemical reaction network
|
|
1
|
30
|
November 22, 2024
|
Getting Catalyst and Oscar to work together
|
|
10
|
157
|
November 20, 2024
|
Finding steady-states symbolicaly
|
|
17
|
273
|
October 14, 2024
|
Time dependent inputs to reaction network in Catalyst
|
|
4
|
50
|
October 9, 2024
|
Parameters modified by events are not captured in ODE the solution
|
|
1
|
98
|
May 23, 2024
|
Callback function modifying model parameter
|
|
15
|
230
|
May 22, 2024
|
Can a callback be triggered at the initial time point (at t=0)
|
|
2
|
106
|
May 16, 2024
|
Implement Matlab/Simbiology concepts (e.g. compartments, repeated assignments) in Julia/Catalyst
|
|
9
|
244
|
May 15, 2024
|
Gradient-based parameter estimation for Catalyst.jl models
|
|
1
|
206
|
April 5, 2024
|
Zero Order Extinction Reaction
|
|
21
|
592
|
March 27, 2024
|
@unpack from Catalyst reaction system and unused variables
|
|
9
|
178
|
February 26, 2024
|
SBMLToolkit and Catalyst Warnings
|
|
3
|
280
|
January 29, 2024
|
UndefVarError when using `EnsembleDistributed()` to solve `ODEProblem`
|
|
1
|
262
|
December 14, 2023
|
Unable to reproduce Catalyst.jl Example
|
|
21
|
749
|
November 13, 2023
|
Unpacking of variables that do not exist
|
|
11
|
475
|
October 31, 2023
|
Efficient simulation of spatially coupled ODEs on arbitrary graphs
|
|
5
|
313
|
June 29, 2023
|
Memory usage while solving `JumpProblem` increases with run time, even with `save_positions=(false,false)`
|
|
37
|
692
|
April 25, 2023
|
Catalyst.jl VariableRateJump
|
|
5
|
391
|
April 7, 2023
|
Catalyst.jl: Algebraically relate two species
|
|
2
|
399
|
March 9, 2023
|
Anybody know why this error occurs when trying to define a Catalyst @reaction_network in Jupyter Notebooks?
|
|
4
|
446
|
January 19, 2023
|
How to partilly instantiate parameters of a reaction network in Catalyst (or ModelingToolkit ?)
|
|
4
|
345
|
September 20, 2022
|
Catalyst.jl compositions with parameters as stoichiometric constants
|
|
4
|
705
|
August 19, 2022
|
How to use Interact.jl to make sliders for reaction network parameters
|
|
3
|
414
|
June 21, 2022
|
Creating sliders for parameters of reaction network to make interactive plot
|
|
1
|
381
|
June 17, 2022
|
How to model a chemical reaction network with changing parameters? (Catalyst.jl)
|
|
5
|
870
|
April 14, 2022
|
Best way to export Catalyst models to SBML format
|
|
2
|
491
|
February 7, 2022
|
How does ModelingToolkit substitute the u0map?
|
|
2
|
614
|
December 7, 2021
|
Random warning messages with Catalyst
|
|
11
|
1888
|
October 24, 2021
|
Solving chemical systems of equations with both equilibrium and kinetic species
|
|
1
|
1053
|
September 25, 2021
|
Constraints in Catalyst.jl for weak acids and pH equilibrium
|
|
2
|
1040
|
September 12, 2021
|