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Calling complete() adds differential constraints to algebraic extension of ReactionSystem
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2
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37
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July 28, 2025
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Catalyst.jl - updating kinetic parameters to be time-dependent after loading a reaction network
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12
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103
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July 27, 2025
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Catalyst.jl - what is the appropriate way to model equilibrium (i.e. pKa?)
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8
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139
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July 24, 2025
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Issue with scoping rules of parameter (and variable) declaration in components (Catalyst vs ModelingToolkit)
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8
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109
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July 2, 2025
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Catalyst.jl - what is the appropriate way to model energy?
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6
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151
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June 23, 2025
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Building Catalyst.jl reaction network from a .csv file - error in construction?
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6
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82
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June 20, 2025
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Time-plotting the derivative of a species (reaction velocity) in catalyst
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1
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72
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June 16, 2025
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Using Catalyst and Symbolics/ModelingToolkit together
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7
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160
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April 8, 2025
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Modelling caffeïne effect on alertness in humans with Catalyst
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4
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162
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April 7, 2025
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Adding jump to JumpProblem defined from Catalyst model
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2
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33
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April 7, 2025
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Is there a way to dynamically add/remove of reactions from ReactionSystem in catalyst
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3
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63
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April 7, 2025
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Cannot recreate JumpProcess example in Catalyst
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0
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24
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March 22, 2025
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Time dependent inputs to reaction network in Catalyst
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5
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138
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February 11, 2025
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Error: MethodError: no method matching validate
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9
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70
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December 2, 2024
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Possibility of factorization for ODEs produced by a mass action chemical reaction network
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1
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42
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November 22, 2024
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Getting Catalyst and Oscar to work together
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10
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236
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November 20, 2024
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Finding steady-states symbolicaly
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17
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346
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October 14, 2024
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Parameters modified by events are not captured in ODE the solution
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1
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108
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May 23, 2024
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Callback function modifying model parameter
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15
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284
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May 22, 2024
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Can a callback be triggered at the initial time point (at t=0)
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2
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126
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May 16, 2024
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Implement Matlab/Simbiology concepts (e.g. compartments, repeated assignments) in Julia/Catalyst
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9
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308
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May 15, 2024
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Gradient-based parameter estimation for Catalyst.jl models
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1
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223
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April 5, 2024
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Zero Order Extinction Reaction
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21
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633
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March 27, 2024
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@unpack from Catalyst reaction system and unused variables
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9
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236
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February 26, 2024
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SBMLToolkit and Catalyst Warnings
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3
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290
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January 29, 2024
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UndefVarError when using `EnsembleDistributed()` to solve `ODEProblem`
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1
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269
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December 14, 2023
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Unable to reproduce Catalyst.jl Example
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21
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810
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November 13, 2023
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Unpacking of variables that do not exist
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11
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502
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October 31, 2023
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Efficient simulation of spatially coupled ODEs on arbitrary graphs
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5
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329
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June 29, 2023
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Memory usage while solving `JumpProblem` increases with run time, even with `save_positions=(false,false)`
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37
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744
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April 25, 2023
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