Hydrogen broke Juno-julia-atom

Boris · February 4, 2018, 1:51pm

Hi,

I tried installed the atom package Hydrogen (after I disabled my Antivirus ) . After an hour and a half of waiting I decided to restart Atom. Since then, Julia does not start.

I get the following from within Atom

Press Enter to start Julia.
juno-msg-precompilingINFO: Precompiling module Atom.
ERROR: LoadError: LoadError: Unable to load

lib (C:\Users\boris\.julia\v0.6\HttpParser\deps\usr\lib\libhttp_parser64.DLL)

Please re-run Pkg.build(package), and restart Julia.
Stacktrace:
 [1] include_from_node1(::String) at .\loading.jl:576
 [2] include(::String) at .\sysimg.jl:14
 [3] include_from_node1(::String) at .\loading.jl:576
 [4] include(::String) at .\sysimg.jl:14
 [5] anonymous at .\<missing>:2
while loading C:\Users\boris\.julia\v0.6\HttpParser\src\..\deps\deps.jl, in expression starting on l
ine 20
while loading C:\Users\boris\.julia\v0.6\HttpParser\src\HttpParser.jl, in expression starting on lin
e 9
ERROR: LoadError: LoadError: Failed to precompile HttpParser to C:\Users\boris\.julia\lib\v0.6\HttpP
arser.ji.
Stacktrace:
 [1] compilecache(::String) at .\loading.jl:710
 [2] _require(::Symbol) at .\loading.jl:463
 [3] require(::Symbol) at .\loading.jl:405
 [4] include_from_node1(::String) at .\loading.jl:576
 [5] include(::String) at .\sysimg.jl:14
 [6] include_from_node1(::String) at .\loading.jl:576
 [7] include(::String) at .\sysimg.jl:14
 [8] anonymous at .\<missing>:2
while loading C:\Users\boris\.julia\v0.6\HttpServer\src\RequestParser.jl, in expression starting on
line 16
while loading C:\Users\boris\.julia\v0.6\HttpServer\src\HttpServer.jl, in expression starting on lin
e 12
ERROR: LoadError: LoadError: Failed to precompile HttpServer to C:\Users\boris\.julia\lib\v0.6\HttpS
erver.ji.
Stacktrace:
 [1] compilecache(::String) at .\loading.jl:710
 [2] _require(::Symbol) at .\loading.jl:463
 [3] require(::Symbol) at .\loading.jl:405
 [4] include_from_node1(::String) at .\loading.jl:576
 [5] include(::String) at .\sysimg.jl:14
 [6] include_from_node1(::String) at .\loading.jl:576
 [7] include(::String) at .\sysimg.jl:14
 [8] anonymous at .\<missing>:2
while loading C:\Users\boris\.julia\v0.6\Mux\src\server.jl, in expression starting on line 1
while loading C:\Users\boris\.julia\v0.6\Mux\src\Mux.jl, in expression starting on line 24
ERROR: LoadError: LoadError: Failed to precompile Mux to C:\Users\boris\.julia\lib\v0.6\Mux.ji.
Stacktrace:
 [1] compilecache(::String) at .\loading.jl:710
 [2] _require(::Symbol) at .\loading.jl:463
 [3] require(::Symbol) at .\loading.jl:405
 [4] include_from_node1(::String) at .\loading.jl:576
 [5] include(::String) at .\sysimg.jl:14
 [6] include_from_node1(::String) at .\loading.jl:576
 [7] include(::String) at .\sysimg.jl:14
 [8] anonymous at .\<missing>:2
while loading C:\Users\boris\.julia\v0.6\Blink\src\content/content.jl, in expression starting on lin
e 1
while loading C:\Users\boris\.julia\v0.6\Blink\src\Blink.jl, in expression starting on line 9
ERROR: LoadError: Failed to precompile Blink to C:\Users\boris\.julia\lib\v0.6\Blink.ji.
Stacktrace:
 [1] compilecache(::String) at .\loading.jl:710
 [2] _require(::Symbol) at .\loading.jl:463
 [3] require(::Symbol) at .\loading.jl:405
 [4] include_from_node1(::String) at .\loading.jl:576
 [5] include(::String) at .\sysimg.jl:14
 [6] anonymous at .\<missing>:2
while loading C:\Users\boris\.julia\v0.6\Atom\src\Atom.jl, in expression starting on line 5
juno-msg-loadERROR: LoadError: Failed to precompile Atom to C:\Users\boris\.julia\lib\v0.6\Atom.ji.
Stacktrace:
 [1] compilecache(::String) at .\loading.jl:710
 [2] _require(::Symbol) at .\loading.jl:497
 [3] require(::Symbol) at .\loading.jl:405
 [4] include_from_node1(::String) at .\loading.jl:576
 [5] include(::String) at .\sysimg.jl:14
 [6] process_options(::Base.JLOptions) at .\client.jl:305
 [7] _start() at .\client.jl:371
while loading C:\Users\boris\.atom\packages\julia-client\script\boot_repl.jl, in expression starting
on line 35

it freezes at the last line and I have to stop Julia.

If i try “using Atom” from the Julia terminal (not in Atom) I get the following:

julia> using Atom
INFO: Precompiling module Atom.
ERROR: LoadError: LoadError: Unable to load

lib (C:\Users\boris\.julia\v0.6\HttpParser\deps\usr\lib\libhttp_parser64.DLL)

Please re-run Pkg.build(package), and restart Julia.
Stacktrace:
 [1] include_from_node1(::String) at .\loading.jl:576
 [2] include(::String) at .\sysimg.jl:14
 [3] include_from_node1(::String) at .\loading.jl:576
 [4] include(::String) at .\sysimg.jl:14
 [5] anonymous at .\<missing>:2
while loading C:\Users\boris\.julia\v0.6\HttpParser\src\..\deps\deps.jl, in expression starting on line 20
while loading C:\Users\boris\.julia\v0.6\HttpParser\src\HttpParser.jl, in expression starting on line 9
ERROR: LoadError: LoadError: Failed to precompile HttpParser to C:\Users\boris\.julia\lib\v0.6\HttpParser.ji.
Stacktrace:
 [1] compilecache(::String) at .\loading.jl:710
 [2] _require(::Symbol) at .\loading.jl:463
 [3] require(::Symbol) at .\loading.jl:405
 [4] include_from_node1(::String) at .\loading.jl:576
 [5] include(::String) at .\sysimg.jl:14
 [6] include_from_node1(::String) at .\loading.jl:576
 [7] include(::String) at .\sysimg.jl:14
 [8] anonymous at .\<missing>:2
while loading C:\Users\boris\.julia\v0.6\HttpServer\src\RequestParser.jl, in expression starting on line 16
while loading C:\Users\boris\.julia\v0.6\HttpServer\src\HttpServer.jl, in expression starting on line 12
ERROR: LoadError: LoadError: Failed to precompile HttpServer to C:\Users\boris\.julia\lib\v0.6\HttpServer.ji.
Stacktrace:
 [1] compilecache(::String) at .\loading.jl:710
 [2] _require(::Symbol) at .\loading.jl:463
 [3] require(::Symbol) at .\loading.jl:405
 [4] include_from_node1(::String) at .\loading.jl:576
 [5] include(::String) at .\sysimg.jl:14
 [6] include_from_node1(::String) at .\loading.jl:576
 [7] include(::String) at .\sysimg.jl:14
 [8] anonymous at .\<missing>:2
while loading C:\Users\boris\.julia\v0.6\Mux\src\server.jl, in expression starting on line 1
while loading C:\Users\boris\.julia\v0.6\Mux\src\Mux.jl, in expression starting on line 24
ERROR: LoadError: LoadError: Failed to precompile Mux to C:\Users\boris\.julia\lib\v0.6\Mux.ji.
Stacktrace:
 [1] compilecache(::String) at .\loading.jl:710
 [2] _require(::Symbol) at .\loading.jl:463
 [3] require(::Symbol) at .\loading.jl:405
 [4] include_from_node1(::String) at .\loading.jl:576
 [5] include(::String) at .\sysimg.jl:14
 [6] include_from_node1(::String) at .\loading.jl:576
 [7] include(::String) at .\sysimg.jl:14
 [8] anonymous at .\<missing>:2
while loading C:\Users\boris\.julia\v0.6\Blink\src\content/content.jl, in expression starting on line 1
while loading C:\Users\boris\.julia\v0.6\Blink\src\Blink.jl, in expression starting on line 9
ERROR: LoadError: Failed to precompile Blink to C:\Users\boris\.julia\lib\v0.6\Blink.ji.
Stacktrace:
 [1] compilecache(::String) at .\loading.jl:710
 [2] _require(::Symbol) at .\loading.jl:463
 [3] require(::Symbol) at .\loading.jl:405
 [4] include_from_node1(::String) at .\loading.jl:576
 [5] include(::String) at .\sysimg.jl:14
 [6] anonymous at .\<missing>:2
while loading C:\Users\boris\.julia\v0.6\Atom\src\Atom.jl, in expression starting on line 5
ERROR: Failed to precompile Atom to C:\Users\boris\.julia\lib\v0.6\Atom.ji.
Stacktrace:
 [1] compilecache(::String) at .\loading.jl:710
 [2] _require(::Symbol) at .\loading.jl:497
 [3] require(::Symbol) at .\loading.jl:405

Since everything was working before, it has to be something with Hydrogen/the IJulia kernel (on which hydrogen depends) and Juno.

Now, I guess, that if I reinstall Atom cleanly this would hopefully go away. However, I would prefer to actually learn how to get to the bottom of such things, if possible. E.g. if a package breaks the link between Atom and Julia, how could I reconfigure it? And how does this happen?

I would be grateful for some tips, as I am still testing the waters and would like to use a text editor and IDE that are sufficiently stable and so far, I am getting the short end of the stick.

Thanks!

Edit:

I should have included that if I try
Pkg.build(“Atom”) I get

julia> Pkg.build("Atom")
INFO: Building HttpParser
INFO: Attempting to create directory C:\Users\boris\.julia\v0.6\HttpParser\deps\downloads
INFO: Directory C:\Users\boris\.julia\v0.6\HttpParser\deps\downloads already exists
INFO: Downloading file https://s3.amazonaws.com/julialang/bin/winnt/extras/libhttp_parser_2_7_1.zip
INFO: Done downloading file https://s3.amazonaws.com/julialang/bin/winnt/extras/libhttp_parser_2_7_1.zip
INFO: Attempting to create directory C:\Users\boris\.julia\v0.6\HttpParser
INFO: Directory C:\Users\boris\.julia\v0.6\HttpParser already exists
INFO: Path C:\Users\boris\.julia\v0.6\HttpParser\deps\usr already exists
=================================================[ ERROR: HttpParser ]==================================================

LoadError: Provider BinDeps.Binaries failed to satisfy dependency libhttp_parser
while loading C:\Users\boris\.julia\v0.6\HttpParser\deps\build.jl, in expression starting on line 71

========================================================================================================================
INFO: Building MbedTLS
Using system libraries...

====================================================[ BUILD ERRORS ]====================================================

WARNING: HttpParser had build errors.

 - packages with build errors remain installed in C:\Users\boris\.julia\v0.6
 - build the package(s) and all dependencies with `Pkg.build("HttpParser")`
 - build a single package by running its `deps/build.jl` script

========================================================================================================================

and then using Atom is again giving an error.

Boris · February 4, 2018, 8:43pm

I had to reinstall everything but Atom to get it working again.

Still no idea why I got such behaviour.

Boris · February 8, 2018, 8:31am

I would like to give some further information, which might be of use to others.

It turns out I have been thinking that atom/juno is unstable because of constantly having to reinstall every piece to get it working again. It turns out that the antivurs is to blame, similar to the post that I reference above.

If you use Avast, make sure to add all folders to the exclusion
.julia
.atom
Local/AppData/Atom

It deletes from time to time files (moves them to the chest) wihtout informing you. Reinstalling packages from within Atom then gets broken, but you get absolutely no idea why. It specifically targets the Atom julia client package!!!

Mostly it has problems with spawninterruptible.ps1 in .atom\julia-client

So even if you disable it once, later you get the same problems!!!

I have been claiming that the software was unstable but this is not the case at all.

Muhammed_Fatih_Talu · February 25, 2018, 4:45am

Same problem!!!
After installation julia, atom and “uber-juno” package, I have encountered the following error message.
Installing “julia-client@0.6.8” failed.