Unable to save pane layout

After a recent update, if I now move around/resize some panes (like REPL, Plot, workspace), after I quit atom and reopen the file, the layout would be lost; I tried unticking the option “open default panes on startup” but that would leave me with no panes at all (and not the ‘deserialized window described’). On macos, julia 1.2 with latest atom/juno/julia-client etc, no other packages. How may I fix this? Thanks!

Relevant settings:

  "julia-client":
    consoleOptions:
      cursorStyle: "bar"
    firstBoot: false
    juliaOptions: {}
    uiOptions:
      enableMenu: true
      enableToolBar: true
      layouts:
        console:
          defaultLocation: "right"
          split: "down"
        debuggerPane:
          split: "up"
        defaultPanes:
          debuggerPane: true
        documentation:
          defaultLocation: "right"
          split: "no split"
        linter:
          defaultLocation: "right"
          split: "up"
        plotPane:
          defaultLocation: "right"
          split: "up"
        profiler:
          defaultLocation: "right"
          split: "up"
        terminal:
          defaultLocation: "right"
        workspace:
          defaultLocation: "right"
          split: "up"

Try turn on Open Default Panes on Startup again.
If you see openDefaultPanesOnStartUp: false under layouts scheme, you have a valid config setup.

If it doesn’t work, try reinstalling Atom with clearing all the possible cache.