Julia crashes on installation of the RCall module

Feng_Chen · October 21, 2024, 11:13pm

I am using Julia 1.11.1 and whenever I try to install RCall, Julia would crash with the following error/log (this also happens with some recent version of Julia). Any suggestions on how to fix it are greatly appreciated. Thanks in advance!

julia> using RCall
│ Package RCall not found, but a package named RCall is available from a registry.
│ Install package?
│ (@v1.11) pkg> add RCall
└ (y/n/o) [y]: y
Resolving package versions…
Installed StatsModels ─── v0.7.4
Installed ShiftedArrays ─ v2.0.0
Installed WinReg ──────── v1.0.0
Installed RCall ───────── v0.14.6
Updating /opt/julia/1.10/local/environments/v1.11/Project.toml
[6f49c342] + RCall v0.14.6
Updating /opt/julia/1.10/local/environments/v1.11/Manifest.toml
[324d7699] + CategoricalArrays v0.10.8
[6f49c342] + RCall v0.14.6
[1277b4bf] + ShiftedArrays v2.0.0
[3eaba693] + StatsModels v0.7.4
[1b915085] + WinReg v1.0.0
Building RCall → /opt/julia/1.10/local/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/db17ec90d9f904b79e7877a764fdf95ff5c5f315/build.log
Precompiling RCall…
7 dependencies successfully precompiled in 2 seconds. 87 already precompiled.
[ Info: Precompiling RCall [6f49c342-dc21-5d91-9882-a32aef131414]

[2675740] signal 11 (1): Segmentation fault
in expression starting at REPL[7]:1
Rf_install at /lib/libR.so (unknown line)
R_initMethodDispatch at /tmp/R-4.2.2/src/library/methods/src/methods_list_dispatch.c:159
R_initMethodDispatch at /tmp/R-4.2.2/src/library/methods/src/methods_list_dispatch.c:156
R_doDotCall at /tmp/R-4.2.2/src/main/dotcode.c:601
bcEval at /tmp/R-4.2.2/src/main/eval.c:7692
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:871
Rf_evalList at /tmp/R-4.2.2/src/main/eval.c:3089
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:842
do_if at /tmp/R-4.2.2/src/main/eval.c:2247
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:823
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:823
do_begin at /tmp/R-4.2.2/src/main/eval.c:2539
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:823
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:871
setup_Rmainloop at /tmp/R-4.2.2/src/main/main.c:1004
initEmbeddedR at /opt/julia/1.10/local/packages/RCall/0ggIQ/src/setup.jl:151
init at /opt/julia/1.10/local/packages/RCall/0ggIQ/src/setup.jl:192
jfptr___init___3338 at /opt/julia/1.10/local/compiled/v1.11/RCall/8GFyb_1fnZC.so (unknown line)
jl_apply at /cache/build/builder-demeter6-6/julialang/julia-master/src/julia.h:2157 [inlined]
jl_module_run_initializer at /cache/build/builder-demeter6-6/julialang/julia-master/src/toplevel.c:76
run_module_init at ./loading.jl:1336
register_restored_modules at ./loading.jl:1324
#_include_from_serialized#1066 at ./loading.jl:1213
_include_from_serialized at ./loading.jl:1169 [inlined]
_tryrequire_from_serialized at ./loading.jl:1902
_require at ./loading.jl:2507
__require_prelocked at ./loading.jl:2315
jfptr___require_prelocked_69877.1 at /home/z3243864/.julia/juliaup/julia-1.11.1+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
jl_apply at /cache/build/builder-demeter6-6/julialang/julia-master/src/julia.h:2157 [inlined]
jl_f__call_in_world at /cache/build/builder-demeter6-6/julialang/julia-master/src/builtins.c:894
#invoke_in_world#3 at ./essentials.jl:1089 [inlined]
invoke_in_world at ./essentials.jl:1086 [inlined]
_require_prelocked at ./loading.jl:2302
macro expansion at ./loading.jl:2241 [inlined]
macro expansion at ./lock.jl:273 [inlined]
__require at ./loading.jl:2198
jfptr___require_69814.1 at /home/z3243864/.julia/juliaup/julia-1.11.1+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
jl_apply at /cache/build/builder-demeter6-6/julialang/julia-master/src/julia.h:2157 [inlined]
jl_f__call_in_world at /cache/build/builder-demeter6-6/julialang/julia-master/src/builtins.c:894
#invoke_in_world#3 at ./essentials.jl:1089 [inlined]
invoke_in_world at ./essentials.jl:1086 [inlined]
require at ./loading.jl:2191
jfptr_require_69803.1 at /home/z3243864/.julia/juliaup/julia-1.11.1+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
jl_apply at /cache/build/builder-demeter6-6/julialang/julia-master/src/julia.h:2157 [inlined]
call_require at /cache/build/builder-demeter6-6/julialang/julia-master/src/toplevel.c:486 [inlined]
eval_import_path at /cache/build/builder-demeter6-6/julialang/julia-master/src/toplevel.c:523
jl_toplevel_eval_flex at /cache/build/builder-demeter6-6/julialang/julia-master/src/toplevel.c:759
jl_toplevel_eval_flex at /cache/build/builder-demeter6-6/julialang/julia-master/src/toplevel.c:886
ijl_toplevel_eval_in at /cache/build/builder-demeter6-6/julialang/julia-master/src/toplevel.c:994
eval at ./boot.jl:430 [inlined]
eval_user_input at /cache/build/builder-demeter6-6/julialang/julia-master/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:245
repl_backend_loop at /cache/build/builder-demeter6-6/julialang/julia-master/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:342
#start_repl_backend#59 at /cache/build/builder-demeter6-6/julialang/julia-master/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:327
start_repl_backend at /cache/build/builder-demeter6-6/julialang/julia-master/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:324
#run_repl#72 at /cache/build/builder-demeter6-6/julialang/julia-master/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:483
run_repl at /cache/build/builder-demeter6-6/julialang/julia-master/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:469
jfptr_run_repl_10088 at /home/z3243864/.julia/juliaup/julia-1.11.1+0.x64.linux.gnu/share/julia/compiled/v1.11/REPL/u0gqU_GYsA8.so (unknown line)
#1139 at ./client.jl:446
jfptr_YY.1139_14649 at /home/z3243864/.julia/juliaup/julia-1.11.1+0.x64.linux.gnu/share/julia/compiled/v1.11/REPL/u0gqU_GYsA8.so (unknown line)
jl_apply at /cache/build/builder-demeter6-6/julialang/julia-master/src/julia.h:2157 [inlined]
jl_f__call_latest at /cache/build/builder-demeter6-6/julialang/julia-master/src/builtins.c:875
#invokelatest#2 at ./essentials.jl:1055 [inlined]
invokelatest at ./essentials.jl:1052 [inlined]
run_main_repl at ./client.jl:430
repl_main at ./client.jl:567 [inlined]
_start at ./client.jl:541
jfptr__start_72144.1 at /home/z3243864/.julia/juliaup/julia-1.11.1+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
jl_apply at /cache/build/builder-demeter6-6/julialang/julia-master/src/julia.h:2157 [inlined]
true_main at /cache/build/builder-demeter6-6/julialang/julia-master/src/jlapi.c:900
jl_repl_entrypoint at /cache/build/builder-demeter6-6/julialang/julia-master/src/jlapi.c:1059
main at /cache/build/builder-demeter6-6/julialang/julia-master/cli/loader_exe.c:58
unknown function (ip: 0x7b1141e29d8f)
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8)
Allocations: 34571251 (Pool: 34566386; Big: 4865); GC: 56
Segmentation fault (core dumped)

ufechner7 · October 21, 2024, 11:18pm

If you are a beginner, please stick with Julia 1.10 for now, Julia 1.11 needs some more time to mature.

Feng_Chen · October 21, 2024, 11:20pm

Thanks, I’ll revert to 1.10 to see how it goes.

jling · October 21, 2024, 11:22pm

github.com/JuliaInterop/RCall.jl

Maintain r-juliacall?

opened 09:28AM - 21 Oct 24 UTC

schlichtanders

Dear maintainers of RCall.jl r-juliacall is breaking for the new julia versio…n 1.11 which makes it uncomfortably obvious that it is currently unclear how the R-Julia interface is going to be maintained. RCall.jl is apparently well maintained and just the other side of the coin. I like to open the discussion, whether r-juliacall (or some new r-juliacall r package) may become maintained by the RCall maintainers, just like PythonCall includes maintenance for pyjuliacall. That would bring a lot of trust for longterm maintenance, which is key for people to seriously include Julia into their R code. The corresponding issue at r-juliacall is this one https://github.com/Non-Contradiction/JuliaCall/issues/208

I think it’s pretty unfortunate that this is broken on 1.11 (1.11 is breaking is unfortunate), and that there’s seems to not be enough maintainer for this interoperability package

Feng_Chen · October 21, 2024, 11:32pm

I reverted to Julia 1.10.5 (the LTS version), but installation of RCall still causes a crash of Julia here is the log:

julia> using RCall
│ Package RCall not found, but a package named RCall is available from a registry.
│ Install package?
│ (@v1.10) pkg> add RCall
└ (y/n/o) [y]: y
Resolving package versions…
Updating /opt/julia/1.10/local/environments/v1.10/Project.toml
[6f49c342] + RCall v0.14.6
Updating /opt/julia/1.10/local/environments/v1.10/Manifest.toml
[6f49c342] + RCall v0.14.6
[1277b4bf] + ShiftedArrays v2.0.0
[3eaba693] + StatsModels v0.7.4
[1b915085] + WinReg v1.0.0
[8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.11.0+0
Precompiling project…
✗ SciMLBase → SciMLBaseRCallExt
? OrdinaryDiffEqNonlinearSolve
? OrdinaryDiffEqStabilizedIRK
? OrdinaryDiffEqSDIRK
? OrdinaryDiffEqFIRK
? OrdinaryDiffEqIMEXMultistep
? OrdinaryDiffEqPDIRK
? OrdinaryDiffEqBDF
? OrdinaryDiffEqDefault
? OrdinaryDiffEq
? DelayDiffEq
? BoundaryValueDiffEq
? StochasticDiffEq
? DifferentialEquations
245 dependencies successfully precompiled in 108 seconds. 253 already precompiled.
13 dependencies failed but may be precompilable after restarting julia
13 dependencies had output during precompilation:
┌ OrdinaryDiffEqPDIRK
│ WARNING: Method definition default_nlsolve(Nothing, Base.Val{true}, Any, SciMLBase.NonlinearProblem{uType, isinplace, P, F, K, PT} where PT where K where F where P where isinplace where uType) in module OrdinaryDiffEqCore at /opt/julia/1.10/local/packages/OrdinaryDiffEqCore/rRqPh/src/initialize_dae.jl:123 overwritten in module OrdinaryDiffEqNonlinearSolve at /opt/julia/1.10/local/packages/OrdinaryDiffEqNonlinearSolve/0gbhD/src/initialize_dae.jl:1.
│ ERROR: Method overwriting is not permitted during Module precompilation. Use __precompile__(false) to opt-out of precompilation.
└
┌ StochasticDiffEq
│ WARNING: Method definition default_nlsolve(Nothing, Base.Val{true}, Any, SciMLBase.NonlinearProblem{uType, isinplace, P, F, K, PT} where PT where K where F where P where isinplace where uType) in module OrdinaryDiffEqCore at /opt/julia/1.10/local/packages/OrdinaryDiffEqCore/rRqPh/src/initialize_dae.jl:123 overwritten in module OrdinaryDiffEqNonlinearSolve at /opt/julia/1.10/local/packages/OrdinaryDiffEqNonlinearSolve/0gbhD/src/initialize_dae.jl:1.
│ ERROR: Method overwriting is not permitted during Module precompilation. Use __precompile__(false) to opt-out of precompilation.
└
┌ BoundaryValueDiffEq
│ WARNING: Method definition default_nlsolve(Nothing, Base.Val{true}, Any, SciMLBase.NonlinearProblem{uType, isinplace, P, F, K, PT} where PT where K where F where P where isinplace where uType) in module OrdinaryDiffEqCore at /opt/julia/1.10/local/packages/OrdinaryDiffEqCore/rRqPh/src/initialize_dae.jl:123 overwritten in module OrdinaryDiffEqNonlinearSolve at /opt/julia/1.10/local/packages/OrdinaryDiffEqNonlinearSolve/0gbhD/src/initialize_dae.jl:1.
│ ERROR: Method overwriting is not permitted during Module precompilation. Use __precompile__(false) to opt-out of precompilation.
└
┌ OrdinaryDiffEq
│ WARNING: Method definition default_nlsolve(Nothing, Base.Val{true}, Any, SciMLBase.NonlinearProblem{uType, isinplace, P, F, K, PT} where PT where K where F where P where isinplace where uType) in module OrdinaryDiffEqCore at /opt/julia/1.10/local/packages/OrdinaryDiffEqCore/rRqPh/src/initialize_dae.jl:123 overwritten in module OrdinaryDiffEqNonlinearSolve at /opt/julia/1.10/local/packages/OrdinaryDiffEqNonlinearSolve/0gbhD/src/initialize_dae.jl:1.
│ ERROR: Method overwriting is not permitted during Module precompilation. Use __precompile__(false) to opt-out of precompilation.
└
┌ OrdinaryDiffEqDefault
│ WARNING: Method definition default_nlsolve(Nothing, Base.Val{true}, Any, SciMLBase.NonlinearProblem{uType, isinplace, P, F, K, PT} where PT where K where F where P where isinplace where uType) in module OrdinaryDiffEqCore at /opt/julia/1.10/local/packages/OrdinaryDiffEqCore/rRqPh/src/initialize_dae.jl:123 overwritten in module OrdinaryDiffEqNonlinearSolve at /opt/julia/1.10/local/packages/OrdinaryDiffEqNonlinearSolve/0gbhD/src/initialize_dae.jl:1.
│ ERROR: Method overwriting is not permitted during Module precompilation. Use __precompile__(false) to opt-out of precompilation.
└
┌ OrdinaryDiffEqBDF
│ WARNING: Method definition default_nlsolve(Nothing, Base.Val{true}, Any, SciMLBase.NonlinearProblem{uType, isinplace, P, F, K, PT} where PT where K where F where P where isinplace where uType) in module OrdinaryDiffEqCore at /opt/julia/1.10/local/packages/OrdinaryDiffEqCore/rRqPh/src/initialize_dae.jl:123 overwritten in module OrdinaryDiffEqNonlinearSolve at /opt/julia/1.10/local/packages/OrdinaryDiffEqNonlinearSolve/0gbhD/src/initialize_dae.jl:1.
│ ERROR: Method overwriting is not permitted during Module precompilation. Use __precompile__(false) to opt-out of precompilation.
└
┌ OrdinaryDiffEqStabilizedIRK
│ WARNING: Method definition default_nlsolve(Nothing, Base.Val{true}, Any, SciMLBase.NonlinearProblem{uType, isinplace, P, F, K, PT} where PT where K where F where P where isinplace where uType) in module OrdinaryDiffEqCore at /opt/julia/1.10/local/packages/OrdinaryDiffEqCore/rRqPh/src/initialize_dae.jl:123 overwritten in module OrdinaryDiffEqNonlinearSolve at /opt/julia/1.10/local/packages/OrdinaryDiffEqNonlinearSolve/0gbhD/src/initialize_dae.jl:1.
│ ERROR: Method overwriting is not permitted during Module precompilation. Use __precompile__(false) to opt-out of precompilation.
└
┌ OrdinaryDiffEqNonlinearSolve
│ WARNING: Method definition default_nlsolve(Nothing, Base.Val{true}, Any, SciMLBase.NonlinearProblem{uType, isinplace, P, F, K, PT} where PT where K where F where P where isinplace where uType) in module OrdinaryDiffEqCore at /opt/julia/1.10/local/packages/OrdinaryDiffEqCore/rRqPh/src/initialize_dae.jl:123 overwritten in module OrdinaryDiffEqNonlinearSolve at /opt/julia/1.10/local/packages/OrdinaryDiffEqNonlinearSolve/0gbhD/src/initialize_dae.jl:1.
│ ERROR: Method overwriting is not permitted during Module precompilation. Use __precompile__(false) to opt-out of precompilation.
└
┌ OrdinaryDiffEqIMEXMultistep
│ WARNING: Method definition default_nlsolve(Nothing, Base.Val{true}, Any, SciMLBase.NonlinearProblem{uType, isinplace, P, F, K, PT} where PT where K where F where P where isinplace where uType) in module OrdinaryDiffEqCore at /opt/julia/1.10/local/packages/OrdinaryDiffEqCore/rRqPh/src/initialize_dae.jl:123 overwritten in module OrdinaryDiffEqNonlinearSolve at /opt/julia/1.10/local/packages/OrdinaryDiffEqNonlinearSolve/0gbhD/src/initialize_dae.jl:1.
│ ERROR: Method overwriting is not permitted during Module precompilation. Use __precompile__(false) to opt-out of precompilation.
└
┌ OrdinaryDiffEqFIRK
│ WARNING: Method definition default_nlsolve(Nothing, Base.Val{true}, Any, SciMLBase.NonlinearProblem{uType, isinplace, P, F, K, PT} where PT where K where F where P where isinplace where uType) in module OrdinaryDiffEqCore at /opt/julia/1.10/local/packages/OrdinaryDiffEqCore/rRqPh/src/initialize_dae.jl:123 overwritten in module OrdinaryDiffEqNonlinearSolve at /opt/julia/1.10/local/packages/OrdinaryDiffEqNonlinearSolve/0gbhD/src/initialize_dae.jl:1.
│ ERROR: Method overwriting is not permitted during Module precompilation. Use __precompile__(false) to opt-out of precompilation.
└
┌ DelayDiffEq
│ WARNING: Method definition default_nlsolve(Nothing, Base.Val{true}, Any, SciMLBase.NonlinearProblem{uType, isinplace, P, F, K, PT} where PT where K where F where P where isinplace where uType) in module OrdinaryDiffEqCore at /opt/julia/1.10/local/packages/OrdinaryDiffEqCore/rRqPh/src/initialize_dae.jl:123 overwritten in module OrdinaryDiffEqNonlinearSolve at /opt/julia/1.10/local/packages/OrdinaryDiffEqNonlinearSolve/0gbhD/src/initialize_dae.jl:1.
│ ERROR: Method overwriting is not permitted during Module precompilation. Use __precompile__(false) to opt-out of precompilation.
└
┌ OrdinaryDiffEqSDIRK
│ WARNING: Method definition default_nlsolve(Nothing, Base.Val{true}, Any, SciMLBase.NonlinearProblem{uType, isinplace, P, F, K, PT} where PT where K where F where P where isinplace where uType) in module OrdinaryDiffEqCore at /opt/julia/1.10/local/packages/OrdinaryDiffEqCore/rRqPh/src/initialize_dae.jl:123 overwritten in module OrdinaryDiffEqNonlinearSolve at /opt/julia/1.10/local/packages/OrdinaryDiffEqNonlinearSolve/0gbhD/src/initialize_dae.jl:1.
│ ERROR: Method overwriting is not permitted during Module precompilation. Use __precompile__(false) to opt-out of precompilation.
└
┌ DifferentialEquations
│ WARNING: Method definition default_nlsolve(Nothing, Base.Val{true}, Any, SciMLBase.NonlinearProblem{uType, isinplace, P, F, K, PT} where PT where K where F where P where isinplace where uType) in module OrdinaryDiffEqCore at /opt/julia/1.10/local/packages/OrdinaryDiffEqCore/rRqPh/src/initialize_dae.jl:123 overwritten in module OrdinaryDiffEqNonlinearSolve at /opt/julia/1.10/local/packages/OrdinaryDiffEqNonlinearSolve/0gbhD/src/initialize_dae.jl:1.
│ ERROR: Method overwriting is not permitted during Module precompilation. Use __precompile__(false) to opt-out of precompilation.
└

[2679029] signal (11.1): Segmentation fault
in expression starting at REPL[1]:1
Rf_install at /lib/libR.so (unknown line)
R_initMethodDispatch at /tmp/R-4.2.2/src/library/methods/src/methods_list_dispatch.c:159
R_initMethodDispatch at /tmp/R-4.2.2/src/library/methods/src/methods_list_dispatch.c:156
R_doDotCall at /tmp/R-4.2.2/src/main/dotcode.c:601
bcEval at /tmp/R-4.2.2/src/main/eval.c:7692
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:871
Rf_evalList at /tmp/R-4.2.2/src/main/eval.c:3089
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:842
do_if at /tmp/R-4.2.2/src/main/eval.c:2247
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:823
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:823
do_begin at /tmp/R-4.2.2/src/main/eval.c:2539
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:823
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:871
setup_Rmainloop at /tmp/R-4.2.2/src/main/main.c:1004
initEmbeddedR at /opt/julia/1.10/local/packages/RCall/0ggIQ/src/setup.jl:151
init at /opt/julia/1.10/local/packages/RCall/0ggIQ/src/setup.jl:192
jfptr___init___3751 at /opt/julia/1.10/local/compiled/v1.10/RCall/8GFyb_dCmFD.so (unknown line)
_jl_invoke at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:2895 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:3077
jl_apply at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/julia.h:1982 [inlined]
jl_module_run_initializer at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/toplevel.c:76
run_module_init at ./loading.jl:1134
register_restored_modules at ./loading.jl:1122
_include_from_serialized at ./loading.jl:1067
_require_search_from_serialized at ./loading.jl:1581
_require at ./loading.jl:1938
__require_prelocked at ./loading.jl:1812
jfptr___require_prelocked_80833.1 at /home/z3243864/.julia/juliaup/julia-1.10.5+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:2895 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:3077
jl_apply at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/julia.h:1982 [inlined]
jl_f__call_in_world at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/builtins.c:831
#invoke_in_world#3 at ./essentials.jl:926 [inlined]
invoke_in_world at ./essentials.jl:923 [inlined]
_require_prelocked at ./loading.jl:1803
macro expansion at ./loading.jl:1790 [inlined]
macro expansion at ./lock.jl:267 [inlined]
__require at ./loading.jl:1753
jfptr___require_80798.1 at /home/z3243864/.julia/juliaup/julia-1.10.5+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:2895 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:3077
jl_apply at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/julia.h:1982 [inlined]
jl_f__call_in_world at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/builtins.c:831
#invoke_in_world#3 at ./essentials.jl:926 [inlined]
invoke_in_world at ./essentials.jl:923 [inlined]
require at ./loading.jl:1746
jfptr_require_80795.1 at /home/z3243864/.julia/juliaup/julia-1.10.5+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:2895 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:3077
jl_apply at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/julia.h:1982 [inlined]
call_require at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/toplevel.c:481 [inlined]
eval_import_path at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/toplevel.c:518
jl_toplevel_eval_flex at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/toplevel.c:752
jl_toplevel_eval_flex at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/toplevel.c:877
ijl_toplevel_eval_in at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/toplevel.c:985
eval at ./boot.jl:385 [inlined]
eval_user_input at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:150
repl_backend_loop at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:246
#start_repl_backend#46 at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:231
start_repl_backend at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:228
_jl_invoke at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:2895 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:3077
#run_repl#59 at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:389
run_repl at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:375
jfptr_run_repl_91805.1 at /home/z3243864/.julia/juliaup/julia-1.10.5+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:2895 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:3077
#1013 at ./client.jl:432
jfptr_YY.1013_82772.1 at /home/z3243864/.julia/juliaup/julia-1.10.5+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:2895 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:3077
jl_apply at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/julia.h:1982 [inlined]
jl_f__call_latest at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/builtins.c:812
#invokelatest#2 at ./essentials.jl:892 [inlined]
invokelatest at ./essentials.jl:889 [inlined]
run_main_repl at ./client.jl:416
exec_options at ./client.jl:333
_start at ./client.jl:552
jfptr__start_82798.1 at /home/z3243864/.julia/juliaup/julia-1.10.5+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:2895 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:3077
jl_apply at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/julia.h:1982 [inlined]
true_main at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/jlapi.c:582
jl_repl_entrypoint at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/jlapi.c:731
main at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/cli/loader_exe.c:58
unknown function (ip: 0x7e4a98c29d8f)
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8)
Allocations: 15888371 (Pool: 15865838; Big: 22533); GC: 17
Segmentation fault (core dumped)

ericphanson · October 21, 2024, 11:33pm

That seems to be a different thing, about r-juliacall instead of RCall.

For me RCall loads without issue on Julia 1.11 on MacOS

(@v1.11) pkg> activate --temp
  Activating new project at `/var/folders/jb/plyyfc_d2bz195_0rc0n_zcw0000gp/T/jl_2Tjdu8`

(jl_2Tjdu8) pkg> add RCall
   Resolving package versions...
   Installed Conda ────────────── v1.10.2
   Installed StringManipulation ─ v0.4.0
   Installed StatsModels ──────── v0.7.4
   Installed RCall ────────────── v0.14.6
   Installed PrettyTables ─────── v2.4.0
   Installed DataFrames ───────── v1.7.0
    Updating `/private/var/folders/jb/plyyfc_d2bz195_0rc0n_zcw0000gp/T/jl_2Tjdu8/Project.toml`
  [6f49c342] + RCall v0.14.6
    Updating `/private/var/folders/jb/plyyfc_d2bz195_0rc0n_zcw0000gp/T/jl_2Tjdu8/Manifest.toml`
  [324d7699] + CategoricalArrays v0.10.8
  [34da2185] + Compat v4.16.0
  [8f4d0f93] + Conda v1.10.2
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.20
  [e2d170a0] + DataValueInterfaces v1.0.0
  [ffbed154] + DocStringExtensions v0.9.3
  [34004b35] + HypergeometricFunctions v0.3.24
  [842dd82b] + InlineStrings v1.4.2
  [41ab1584] + InvertedIndices v1.3.0
  [92d709cd] + IrrationalConstants v0.2.2
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.6.1
  [682c06a0] + JSON v0.21.4
  [b964fa9f] + LaTeXStrings v1.4.0
  [2ab3a3ac] + LogExpFunctions v0.3.28
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.6.3
  [69de0a69] + Parsers v2.8.1
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [6f49c342] + RCall v0.14.6
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.0
  [79098fc4] + Rmath v0.8.0
  [91c51154] + SentinelArrays v1.4.5
  [1277b4bf] + ShiftedArrays v2.0.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.4.0
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.3
  [4c63d2b9] + StatsFuns v1.3.2
  [3eaba693] + StatsModels v0.7.4
  [892a3eda] + StringManipulation v0.4.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [81def892] + VersionParsing v1.3.0
  [1b915085] + WinReg v1.0.0
  [efe28fd5] + OpenSpecFun_jll v0.5.5+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [05823500] + OpenLibm_jll v0.8.1+2
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
    Building Conda → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log`
    Building RCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/db17ec90d9f904b79e7877a764fdf95ff5c5f315/build.log`
Precompiling project...
  34 dependencies successfully precompiled in 40 seconds. 49 already precompiled.

julia> using RCall
[ Info: Precompiling RCall [6f49c342-dc21-5d91-9882-a32aef131414]

julia> versioninfo()
Julia Version 1.11.1
Commit 8f5b7ca12ad (2024-10-16 10:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: macOS (arm64-apple-darwin22.4.0)
  CPU: 8 × Apple M1
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, apple-m1)
Threads: 4 default, 0 interactive, 2 GC (on 4 virtual cores)
Environment:
  JULIA_NUM_THREADS = 4
  JULIA_PKG_SERVER_REGISTRY_PREFERENCE = eager

Feng_Chen · October 21, 2024, 11:33pm

PS: here is the versioninfo() output:

julia> versioninfo()
Julia Version 1.10.5
Commit 6f3fdf7b362 (2024-08-27 14:19 UTC)
Build Info:
Official https://julialang.org/ release
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: 24 × 12th Gen Intel(R) Core™ i9-12900
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-15.0.7 (ORCJIT, alderlake)
Threads: 16 default, 0 interactive, 8 GC (on 24 virtual cores)
Environment:
JULIA_DEPOT_PATH = /opt/julia/1.10/local
LD_LIBRARY_PATH = /home/z3243864/usr/local/lib:/opt/R/4.2.2/lib64/R/lib
JULIA_NUM_THREADS = 16

ericphanson · October 21, 2024, 11:37pm

This looks like an issue with the R installation, it shows up a lot in this issue: Error building `Rcall`: R cannot be found · Issue #326 · JuliaInterop/RCall.jl · GitHub

Can you try setting R_HOME to point to an R installation, and then try Pkg.build("RCall")? Following these docs

Feng_Chen · October 21, 2024, 11:39pm

I will try and report back. Thanks!

Feng_Chen · October 21, 2024, 11:52pm

I can build RCall without any issue, but when tried to load RCall, I again got a segfault. Here is the log:

julia> ENV[“R_HOME”]=“/opt/R/4.2.2/lib/R”
“/opt/R/4.2.2/lib/R”

julia> Pkg.build(“RCall”)
Building Conda → /opt/julia/1.10/local/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log
Building RCall → /opt/julia/1.10/local/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/db17ec90d9f904b79e7877a764fdf95ff5c5f315/build.log
Precompiling project…
? OrdinaryDiffEqNonlinearSolve
? OrdinaryDiffEqStabilizedIRK
? OrdinaryDiffEqSDIRK
? OrdinaryDiffEqFIRK
? OrdinaryDiffEqIMEXMultistep
? OrdinaryDiffEqPDIRK
? OrdinaryDiffEqBDF
? OrdinaryDiffEqDefault
? OrdinaryDiffEq
? DelayDiffEq
? BoundaryValueDiffEq
? StochasticDiffEq
? DifferentialEquations

julia> using RCall
[ Info: Precompiling RCall [6f49c342-dc21-5d91-9882-a32aef131414]

[2689115] signal (11.1): Segmentation fault
in expression starting at REPL[7]:1
Rf_install at /lib/libR.so (unknown line)
R_initMethodDispatch at /tmp/R-4.2.2/src/library/methods/src/methods_list_dispatch.c:159
R_initMethodDispatch at /tmp/R-4.2.2/src/library/methods/src/methods_list_dispatch.c:156
R_doDotCall at /tmp/R-4.2.2/src/main/dotcode.c:601
bcEval at /tmp/R-4.2.2/src/main/eval.c:7692
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
forcePromise at /tmp/R-4.2.2/src/main/eval.c:568
FORCE_PROMISE at /tmp/R-4.2.2/src/main/eval.c:5157 [inlined]
getvar at /tmp/R-4.2.2/src/main/eval.c:5198
bcEval at /tmp/R-4.2.2/src/main/eval.c:6888
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
bcEval at /tmp/R-4.2.2/src/main/eval.c:7104
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:748
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:871
Rf_evalList at /tmp/R-4.2.2/src/main/eval.c:3089
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:842
do_if at /tmp/R-4.2.2/src/main/eval.c:2247
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:823
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:823
do_begin at /tmp/R-4.2.2/src/main/eval.c:2539
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:823
R_execClosure at /tmp/R-4.2.2/src/main/eval.c:1918
Rf_applyClosure at /tmp/R-4.2.2/src/main/eval.c:1844
Rf_eval at /tmp/R-4.2.2/src/main/eval.c:871
setup_Rmainloop at /tmp/R-4.2.2/src/main/main.c:1004
initEmbeddedR at /opt/julia/1.10/local/packages/RCall/0ggIQ/src/setup.jl:151
init at /opt/julia/1.10/local/packages/RCall/0ggIQ/src/setup.jl:192
jfptr___init___3335 at /opt/julia/1.10/local/compiled/v1.10/RCall/8GFyb_dCmFD.so (unknown line)
_jl_invoke at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:2895 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:3077
jl_apply at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/julia.h:1982 [inlined]
jl_module_run_initializer at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/toplevel.c:76
run_module_init at ./loading.jl:1134
register_restored_modules at ./loading.jl:1122
_include_from_serialized at ./loading.jl:1067
_tryrequire_from_serialized at ./loading.jl:1531
unknown function (ip: 0x73503f4aef00)
_require at ./loading.jl:1990
__require_prelocked at ./loading.jl:1812
jfptr___require_prelocked_80833.1 at /home/z3243864/.julia/juliaup/julia-1.10.5+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:2895 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:3077
jl_apply at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/julia.h:1982 [inlined]
jl_f__call_in_world at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/builtins.c:831
#invoke_in_world#3 at ./essentials.jl:926 [inlined]
invoke_in_world at ./essentials.jl:923 [inlined]
_require_prelocked at ./loading.jl:1803
macro expansion at ./loading.jl:1790 [inlined]
macro expansion at ./lock.jl:267 [inlined]
__require at ./loading.jl:1753
jfptr___require_80798.1 at /home/z3243864/.julia/juliaup/julia-1.10.5+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:2895 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:3077
jl_apply at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/julia.h:1982 [inlined]
jl_f__call_in_world at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/builtins.c:831
#invoke_in_world#3 at ./essentials.jl:926 [inlined]
invoke_in_world at ./essentials.jl:923 [inlined]
require at ./loading.jl:1746
jfptr_require_80795.1 at /home/z3243864/.julia/juliaup/julia-1.10.5+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:2895 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:3077
jl_apply at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/julia.h:1982 [inlined]
call_require at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/toplevel.c:481 [inlined]
eval_import_path at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/toplevel.c:518
jl_toplevel_eval_flex at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/toplevel.c:752
jl_toplevel_eval_flex at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/toplevel.c:877
ijl_toplevel_eval_in at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/toplevel.c:985
eval at ./boot.jl:385 [inlined]
eval_user_input at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:150
repl_backend_loop at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:246
#start_repl_backend#46 at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:231
start_repl_backend at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:228
_jl_invoke at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:2895 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:3077
#run_repl#59 at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:389
run_repl at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:375
jfptr_run_repl_91805.1 at /home/z3243864/.julia/juliaup/julia-1.10.5+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:2895 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:3077
#1013 at ./client.jl:432
jfptr_YY.1013_82772.1 at /home/z3243864/.julia/juliaup/julia-1.10.5+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:2895 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:3077
jl_apply at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/julia.h:1982 [inlined]
jl_f__call_latest at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/builtins.c:812
#invokelatest#2 at ./essentials.jl:892 [inlined]
invokelatest at ./essentials.jl:889 [inlined]
run_main_repl at ./client.jl:416
exec_options at ./client.jl:333
_start at ./client.jl:552
jfptr__start_82798.1 at /home/z3243864/.julia/juliaup/julia-1.10.5+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:2895 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/gf.c:3077
jl_apply at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/julia.h:1982 [inlined]
true_main at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/jlapi.c:582
jl_repl_entrypoint at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/src/jlapi.c:731
main at /cache/build/builder-amdci4-4/julialang/julia-release-1-dot-10/cli/loader_exe.c:58
unknown function (ip: 0x735040629d8f)
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8)
Allocations: 12587928 (Pool: 12569945; Big: 17983); GC: 21
Segmentation fault (core dumped)

ericphanson · October 22, 2024, 12:12pm

Ok, I would suggest filing an issue on github for RCall.jl, maybe someone there knows what the problem is

Feng_Chen · October 23, 2024, 8:08am

thanks for the advice. Will try that.