I’m experiencing a segmentation fault when using Plots in 1.8.4.
Thing I have done recently:
- upgraded Mint to 21 (fresh install)
- installed (with juliaup) the 1.9.0-beta2 version of julia, and added Plots to it
The problem does not occur in Julia 1.9.0-beta2, and from the log message, it seems to be something relate to system libraries, although I could not really see where to further investigate.
The full error is below, for anyone to see. This is trying to use Plots in a fresh Julia section, a new temporary environment:
error
% julia
_
_ _ _(_)_ | Documentation: https://docs.julialang.org
(_) | (_) (_) |
_ _ _| |_ __ _ | Type "?" for help, "]?" for Pkg help.
| | | | | | |/ _` | |
| | |_| | | | (_| | | Version 1.8.4 (2022-12-23)
_/ |\__'_|_|_|\__'_| | Official https://julialang.org/ release
|__/ |
(@v1.8) pkg> activate --temp
Activating new project at `/tmp/jl_pQBAt3`
(jl_pQBAt3) pkg> add Plots
Updating registry at `~/.julia/registries/General.toml`
Resolving package versions...
Updating `/tmp/jl_pQBAt3/Project.toml`
[91a5bcdd] + Plots v1.38.0
Updating `/tmp/jl_pQBAt3/Manifest.toml`
[d1d4a3ce] + BitFlags v0.1.7
[d360d2e6] + ChainRulesCore v1.15.6
[9e997f8a] + ChangesOfVariables v0.1.4
[944b1d66] + CodecZlib v0.7.0
[35d6a980] + ColorSchemes v3.20.0
[3da002f7] + ColorTypes v0.11.4
[c3611d14] + ColorVectorSpace v0.9.10
[5ae59095] + Colors v0.12.10
[34da2185] + Compat v4.5.0
[d38c429a] + Contour v0.6.2
[9a962f9c] + DataAPI v1.14.0
[864edb3b] + DataStructures v0.18.13
[ffbed154] + DocStringExtensions v0.9.3
[c87230d0] + FFMPEG v0.4.1
[53c48c17] + FixedPointNumbers v0.8.4
[59287772] + Formatting v0.4.2
[28b8d3ca] + GR v0.71.2
[42e2da0e] + Grisu v1.0.2
[cd3eb016] + HTTP v1.6.2
[83e8ac13] + IniFile v0.5.1
[3587e190] + InverseFunctions v0.1.8
[92d709cd] + IrrationalConstants v0.1.1
[1019f520] + JLFzf v0.1.5
[692b3bcd] + JLLWrappers v1.4.1
[682c06a0] + JSON v0.21.3
[b964fa9f] + LaTeXStrings v1.3.0
[23fbe1c1] + Latexify v0.15.17
[2ab3a3ac] + LogExpFunctions v0.3.19
[e6f89c97] + LoggingExtras v1.0.0
[1914dd2f] + MacroTools v0.5.10
[739be429] + MbedTLS v1.1.7
[442fdcdd] + Measures v0.3.2
[e1d29d7a] + Missings v1.1.0
[77ba4419] + NaNMath v1.0.1
[4d8831e6] + OpenSSL v1.3.2
[bac558e1] + OrderedCollections v1.4.1
[69de0a69] + Parsers v2.5.2
[b98c9c47] + Pipe v1.3.0
[ccf2f8ad] + PlotThemes v3.1.0
[995b91a9] + PlotUtils v1.3.2
[91a5bcdd] + Plots v1.38.0
[21216c6a] + Preferences v1.3.0
[3cdcf5f2] + RecipesBase v1.3.2
[01d81517] + RecipesPipeline v0.6.11
[189a3867] + Reexport v1.2.2
[05181044] + RelocatableFolders v1.0.0
[ae029012] + Requires v1.3.0
[6c6a2e73] + Scratch v1.1.1
[992d4aef] + Showoff v1.0.3
[777ac1f9] + SimpleBufferStream v1.1.0
[66db9d55] + SnoopPrecompile v1.0.1
[a2af1166] + SortingAlgorithms v1.1.0
[276daf66] + SpecialFunctions v2.1.7
[82ae8749] + StatsAPI v1.5.0
[2913bbd2] + StatsBase v0.33.21
[62fd8b95] + TensorCore v0.1.1
[3bb67fe8] + TranscodingStreams v0.9.10
[5c2747f8] + URIs v1.4.1
[1cfade01] + UnicodeFun v0.4.1
[41fe7b60] + Unzip v0.2.0
[6e34b625] + Bzip2_jll v1.0.8+0
[83423d85] + Cairo_jll v1.16.1+1
[2e619515] + Expat_jll v2.4.8+0
[b22a6f82] + FFMPEG_jll v4.4.2+2
[a3f928ae] + Fontconfig_jll v2.13.93+0
[d7e528f0] + FreeType2_jll v2.10.4+0
[559328eb] + FriBidi_jll v1.0.10+0
[0656b61e] + GLFW_jll v3.3.8+0
[d2c73de3] + GR_jll v0.71.2+0
[78b55507] + Gettext_jll v0.21.0+0
[7746bdde] + Glib_jll v2.74.0+2
[3b182d85] + Graphite2_jll v1.3.14+0
[2e76f6c2] + HarfBuzz_jll v2.8.1+1
[aacddb02] + JpegTurbo_jll v2.1.2+0
[c1c5ebd0] + LAME_jll v3.100.1+0
[88015f11] + LERC_jll v3.0.0+1
[dd4b983a] + LZO_jll v2.10.1+0
⌅ [e9f186c6] + Libffi_jll v3.2.2+1
[d4300ac3] + Libgcrypt_jll v1.8.7+0
[7e76a0d4] + Libglvnd_jll v1.6.0+0
[7add5ba3] + Libgpg_error_jll v1.42.0+0
[94ce4f54] + Libiconv_jll v1.16.1+2
[4b2f31a3] + Libmount_jll v2.35.0+0
[89763e89] + Libtiff_jll v4.4.0+0
[38a345b3] + Libuuid_jll v2.36.0+0
[e7412a2a] + Ogg_jll v1.3.5+1
[458c3c95] + OpenSSL_jll v1.1.19+0
[efe28fd5] + OpenSpecFun_jll v0.5.5+0
[91d4177d] + Opus_jll v1.3.2+0
[30392449] + Pixman_jll v0.40.1+0
[ea2cea3b] + Qt5Base_jll v5.15.3+2
[a2964d1f] + Wayland_jll v1.21.0+0
[2381bf8a] + Wayland_protocols_jll v1.25.0+0
[02c8fc9c] + XML2_jll v2.10.3+0
[aed1982a] + XSLT_jll v1.1.34+0
[4f6342f7] + Xorg_libX11_jll v1.6.9+4
[0c0b7dd1] + Xorg_libXau_jll v1.0.9+4
[935fb764] + Xorg_libXcursor_jll v1.2.0+4
[a3789734] + Xorg_libXdmcp_jll v1.1.3+4
[1082639a] + Xorg_libXext_jll v1.3.4+4
[d091e8ba] + Xorg_libXfixes_jll v5.0.3+4
[a51aa0fd] + Xorg_libXi_jll v1.7.10+4
[d1454406] + Xorg_libXinerama_jll v1.1.4+4
[ec84b674] + Xorg_libXrandr_jll v1.5.2+4
[ea2f1a96] + Xorg_libXrender_jll v0.9.10+4
[14d82f49] + Xorg_libpthread_stubs_jll v0.1.0+3
[c7cfdc94] + Xorg_libxcb_jll v1.13.0+3
[cc61e674] + Xorg_libxkbfile_jll v1.1.0+4
[12413925] + Xorg_xcb_util_image_jll v0.4.0+1
[2def613f] + Xorg_xcb_util_jll v0.4.0+1
[975044d2] + Xorg_xcb_util_keysyms_jll v0.4.0+1
[0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.9+1
[c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.1+1
[35661453] + Xorg_xkbcomp_jll v1.4.2+4
[33bec58e] + Xorg_xkeyboard_config_jll v2.27.0+4
[c5fb5394] + Xorg_xtrans_jll v1.4.0+3
[3161d3a3] + Zstd_jll v1.5.2+0
⌅ [214eeab7] + fzf_jll v0.29.0+0
[a4ae2306] + libaom_jll v3.4.0+0
[0ac62f75] + libass_jll v0.15.1+0
[f638f0a6] + libfdk_aac_jll v2.0.2+0
[b53b4c65] + libpng_jll v1.6.38+0
[f27f6e37] + libvorbis_jll v1.3.7+1
[1270edf5] + x264_jll v2021.5.5+0
[dfaa095f] + x265_jll v3.5.0+0
[d8fb68d0] + xkbcommon_jll v1.4.1+0
[0dad84c5] + ArgTools v1.1.1
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[f43a241f] + Downloads v1.6.0
[7b1f6079] + FileWatching
[b77e0a4c] + InteractiveUtils
[b27032c2] + LibCURL v0.6.3
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[ca575930] + NetworkOptions v1.2.0
[44cfe95a] + Pkg v1.8.0
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA v0.7.0
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[fa267f1f] + TOML v1.0.0
[a4e569a6] + Tar v1.10.1
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
[e66e0078] + CompilerSupportLibraries_jll v1.0.1+0
[deac9b47] + LibCURL_jll v7.84.0+0
[29816b5a] + LibSSH2_jll v1.10.2+0
[c8ffd9c3] + MbedTLS_jll v2.28.0+0
[14a3606d] + MozillaCACerts_jll v2022.2.1
[4536629a] + OpenBLAS_jll v0.3.20+0
[05823500] + OpenLibm_jll v0.8.1+0
[efcefdf7] + PCRE2_jll v10.40.0+0
[83775a58] + Zlib_jll v1.2.12+3
[8e850b90] + libblastrampoline_jll v5.1.1+0
[8e850ede] + nghttp2_jll v1.48.0+0
[3f19e933] + p7zip_jll v17.4.0+0
Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
julia> using Plots
signal (6): Aborted
in expression starting at REPL[3]:1
pthread_kill at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
raise at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
jl_reinit_item at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/dump.c:2834
jl_finalize_deserializer at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/dump.c:2854 [inlined]
_jl_restore_incremental at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/dump.c:3379
ijl_restore_incremental at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/dump.c:3436
_include_from_serialized at ./loading.jl:807
_require_search_from_serialized at ./loading.jl:1039
_require at ./loading.jl:1315
_require_prelocked at ./loading.jl:1200
macro expansion at ./loading.jl:1180 [inlined]
macro expansion at ./lock.jl:223 [inlined]
require at ./loading.jl:1144
jfptr_require_29799.clone_1 at /home/leandro/.julia/juliaup/julia-1.8.4+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/gf.c:2377 [inlined]
ijl_apply_generic at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/gf.c:2559
jl_apply at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/julia.h:1843 [inlined]
call_require at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/toplevel.c:462 [inlined]
eval_import_path at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/toplevel.c:499
jl_toplevel_eval_flex at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/toplevel.c:725
jl_toplevel_eval_flex at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/toplevel.c:850
jl_toplevel_eval_flex at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/toplevel.c:850
ijl_toplevel_eval_in at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/toplevel.c:965
eval at ./boot.jl:368 [inlined]
eval_user_input at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/usr/share/julia/stdlib/v1.8/REPL/src/REPL.jl:151
repl_backend_loop at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/usr/share/julia/stdlib/v1.8/REPL/src/REPL.jl:247
start_repl_backend at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/usr/share/julia/stdlib/v1.8/REPL/src/REPL.jl:232
#run_repl#47 at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/usr/share/julia/stdlib/v1.8/REPL/src/REPL.jl:369
run_repl at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/usr/share/julia/stdlib/v1.8/REPL/src/REPL.jl:355
jfptr_run_repl_64164.clone_1 at /home/leandro/.julia/juliaup/julia-1.8.4+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/gf.c:2377 [inlined]
ijl_apply_generic at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/gf.c:2559
#967 at ./client.jl:419
jfptr_YY.967_37865.clone_1 at /home/leandro/.julia/juliaup/julia-1.8.4+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/gf.c:2377 [inlined]
ijl_apply_generic at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/gf.c:2559
jl_apply at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/julia.h:1843 [inlined]
jl_f__call_latest at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/builtins.c:774
#invokelatest#2 at ./essentials.jl:729 [inlined]
invokelatest at ./essentials.jl:726 [inlined]
run_main_repl at ./client.jl:404
exec_options at ./client.jl:318
_start at ./client.jl:522
jfptr__start_58474.clone_1 at /home/leandro/.julia/juliaup/julia-1.8.4+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/gf.c:2377 [inlined]
ijl_apply_generic at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/gf.c:2559
jl_apply at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/julia.h:1843 [inlined]
true_main at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/jlapi.c:575
jl_repl_entrypoint at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/src/jlapi.c:719
main at /cache/build/default-aws-shared0-3/julialang/julia-release-1-dot-8/cli/loader_exe.c:59
unknown function (ip: 0x7f395fe3cd8f)
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x401098)
Allocations: 7329488 (Pool: 7322193; Big: 7295); GC: 11