Hello. I am trying to run my julia project on my school’s cluster. They have pre installed a Julia v1.7.1 Linux x86 binary. Adding Plots in the Pkg interface causes pre-compilation to fail:
Precompiling project...
✗ Plots
19 dependencies successfully precompiled in 46 seconds (114 already precompiled)
1 dependency errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the package
Running Pkg.precompile() results in no output. If I then import Plots into my current session, I end up with the following error:
julia> using Plots
ERROR: InitError: could not load library "/n/home06/dochang/.julia/artifacts/303fe895f57042ea41055187ec4af6322989b5cc/lib/libgobject-2.0.so"
/n/home06/dochang/.julia/artifacts/303fe895f57042ea41055187ec4af6322989b5cc/lib/libgobject-2.0.so: undefined symbol: g_pattern_spec_copy
Stacktrace:
[1] dlopen(s::String, flags::UInt32; throw_error::Bool)
@ Base.Libc.Libdl ./libdl.jl:117
[2] dlopen(s::String, flags::UInt32)
@ Base.Libc.Libdl ./libdl.jl:117
[3] macro expansion
@ ~/.julia/packages/JLLWrappers/QpMQW/src/products/library_generators.jl:54 [inlined]
[4] __init__()
@ Glib_jll ~/.julia/packages/Glib_jll/lyJkt/src/wrappers/x86_64-linux-gnu.jl:36
[5] _include_from_serialized(path::String, depmods::Vector{Any})
@ Base ./loading.jl:768
[6] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String)
@ Base ./loading.jl:854
[7] _tryrequire_from_serialized(modkey::Base.PkgId, build_id::UInt64, modpath::String)
@ Base ./loading.jl:783
[8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String)
@ Base ./loading.jl:843
[9] _tryrequire_from_serialized(modkey::Base.PkgId, build_id::UInt64, modpath::String)
@ Base ./loading.jl:783
[10] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String)
@ Base ./loading.jl:843
[11] _require(pkg::Base.PkgId)
@ Base ./loading.jl:1097
[12] require(uuidkey::Base.PkgId)
@ Base ./loading.jl:1013
[13] require(into::Module, mod::Symbol)
@ Base ./loading.jl:997
during initialization of module Glib_jll
I get a completely different error if I try importing again in the same session:
julia> using Plots
ERROR: InitError: could not load library "/n/home06/dochang/.julia/artifacts/988066cc974e30c89774b0c471f47201975a4423/lib/libQt5Concurrent.so"
/n/home06/dochang/.julia/artifacts/988066cc974e30c89774b0c471f47201975a4423/lib/libQt5Concurrent.so: cannot open shared object file: No such file or directory
Stacktrace:
[1] dlopen(s::String, flags::UInt32; throw_error::Bool)
@ Base.Libc.Libdl ./libdl.jl:117
[2] dlopen(s::String, flags::UInt32)
@ Base.Libc.Libdl ./libdl.jl:117
[3] macro expansion
@ ~/.julia/packages/JLLWrappers/QpMQW/src/products/library_generators.jl:54 [inlined]
[4] __init__()
@ Qt5Base_jll ~/.julia/packages/Qt5Base_jll/lpIK6/src/wrappers/x86_64-linux-gnu-cxx11.jl:31
[5] _include_from_serialized(path::String, depmods::Vector{Any})
@ Base ./loading.jl:768
[6] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String)
@ Base ./loading.jl:854
[7] _tryrequire_from_serialized(modkey::Base.PkgId, build_id::UInt64, modpath::String)
@ Base ./loading.jl:783
[8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String)
@ Base ./loading.jl:843
[9] _require(pkg::Base.PkgId)
@ Base ./loading.jl:1097
[10] require(uuidkey::Base.PkgId)
@ Base ./loading.jl:1013
[11] require(into::Module, mod::Symbol)
@ Base ./loading.jl:997
during initialization of module Qt5Base_jll
Importing a third time just results in the same error as the second. I’ve tried changing my .julia/config/startup.jl to include:
ENV["LD_LIBRARY_PATH"] = ""
since I’ve seen this given as a solution in another post; but this failed to resolve my problem.
Does anyone know how to resolve this? Help would be greatly appreciated.