‘‘‘ ppGppSys1 = @reaction_network begin kin, ∅ --> G6P hill(G6P,v01,k01,1), G6P → F6P end odesys = convert(ODESystem, ppGppSys1; combinatoric_ratelaws=false, remove_conserved = true) latexify(odesys)‘‘‘ produces \begin{align} \frac{\mathrm{d} \mathtt{G6P}\left( t \ri…

I realise that the issue is not with “latexify” but rather the definition of Catalyst.mm and Catalyst.hill. If I define a “model” with few reactions using these rates and then use the following code to check the ode rate laws: rxs = reactions(lmodel) ν = oderatelaw.(rxs) I can see that the “mm” …

Can you please provide a full MWE that is properly formatted as code in your post so it can be copied and pasted to run?

Thanks - I figures another way, in which “mm” behaves as expected. Here is the code to illustrate. The first reaction (M0 to M1) is written, as I understand the “mm” usage from example in the docs and gives be the squared dependency on M0 concentration: mmModel = @reaction_network begin …

It seems like maybe there is a misunderstanding about how Catalyst arrows work. When you use --> Catalyst always generates a mass action term for the rate law defined by the substrate stoichiometry that multiplies whatever your “rate” term is. i.e. all the terms that multiply k here . In your case k …

So just to add a concrete example, mm(M0,v01,k01), M0 + 2A --> M1 should give the rate law of mm(M0,v01,k01) * M0 * (A^2/2) per that page I linked. If you only want the mm term you can use mm(M0,v01,k01), M0 + 2A => M1 which should just give a rate law of mm(M0,v01,k01)

Latexify/Catalyst introduces extra exponent - issue with mm and hill?

New to Julia

isaacsas August 25, 2025, 12:50pm 4

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Latexify/Catalyst introduces extra exponent - issue with mm and hill?

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