JuMP precompiling error on an AWS EC2 Ubuntu server instance

newstatement · January 9, 2020, 1:24pm

I am trying to use an AWS EC2 instance (t2.micro with Ubuntu Server 18.04) to run an optimization model designed in JuMP. I’m using Julia v1.3.1 and when I try to load JuMP package a fail occurs at precompiling. Some one knows about it? At Ubuntu Desktop 18.04 on my computer the error does not happen. Could it be some dependency of JuMP non-native on Ubuntu Server?

julia> using JuMP
[ Info: Precompiling JuMP [4076af6c-e467-56ae-b986-b466b2749572]
ERROR: LoadError: Failed to precompile MathOptInterface [b8f27783-ece8-5eb3-8dc8-9495eed66fee] to /home/ubuntu/.julia/compiled/v1.3/MathOptInterface/tyub8_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917
 [6] include at ./boot.jl:328 [inlined]
 [7] include_relative(::Module, ::String) at ./loading.jl:1105
 [8] include(::Module, ::String) at ./Base.jl:31
 [9] top-level scope at none:2
 [10] eval at ./boot.jl:330 [inlined]
 [11] eval(::Expr) at ./client.jl:425
 [12] top-level scope at ./none:3
in expression starting at /home/ubuntu/.julia/packages/JuMP/MsUSY/src/JuMP.jl:16
ERROR: Failed to precompile JuMP [4076af6c-e467-56ae-b986-b466b2749572] to /home/ubuntu/.julia/compiled/v1.3/JuMP/DmXqY_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917

odow · January 9, 2020, 2:01pm

Weird. What happens if you try

import Pkg
Pkg.add("MathOptInterface")
using MathOptInterface

newstatement · January 9, 2020, 3:41pm

I already tried, still giving error. I think MathOptInterface is installed with JuMP, because when I imported it was only updated MathOptInterface.

odow · January 9, 2020, 3:48pm

What does the error say?

Try

import Pkg
Pkg.rm("JuMP")
Pkg.rm("MathOptInterface")
Pkg.add("JuMP")
using JuMP

newstatement · January 9, 2020, 4:36pm

Doesn’t work…


ubuntu@ip-172-31-12-156:~$ julia
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _  |  |
  | | |_| | | | (_| |  |  Version 1.3.1 (2019-12-30)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

julia> import Pkg

julia> Pkg.rm("JuMP")
  Updating `~/.julia/environments/v1.3/Project.toml`
  [4076af6c] - JuMP v0.20.1
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [49dc2e85] - Calculus v0.5.1
  [bbf7d656] - CommonSubexpressions v0.2.0
  [163ba53b] - DiffResults v1.0.2
  [b552c78f] - DiffRules v1.0.0
  [f6369f11] - ForwardDiff v0.10.8
  [4076af6c] - JuMP v0.20.1
  [77ba4419] - NaNMath v0.3.3
  [efe28fd5] - OpenSpecFun_jll v0.5.3+1
  [276daf66] - SpecialFunctions v0.9.0
  [90137ffa] - StaticArrays v0.12.1

julia> Pkg.rm("MathOptInterface")
  Updating `~/.julia/environments/v1.3/Project.toml`
  [b8f27783] - MathOptInterface v0.9.9
  Updating `~/.julia/environments/v1.3/Manifest.toml`
 [no changes]

julia> Pkg.add("JuMP")
  Updating registry at `~/.julia/registries/General`
  Updating git-repo `https://github.com/JuliaRegistries/General.git`
    Fetching: [>                                       Fetching: [=====>                                  Fetching: [=========>                              Fetching: [==============>                         Fetching: [==================>                     Fetching: [=======================>                Fetching: [===========================>            Fetching: [================================>       Fetching: [====================================    Fetching: [==================================== Resolving package versions...
  Updating `~/.julia/environments/v1.3/Project.toml`
  [4076af6c] + JuMP v0.20.1
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [49dc2e85] + Calculus v0.5.1
  [bbf7d656] + CommonSubexpressions v0.2.0
  [163ba53b] + DiffResults v1.0.2
  [b552c78f] + DiffRules v1.0.0
  [f6369f11] + ForwardDiff v0.10.8
  [4076af6c] + JuMP v0.20.1
  [77ba4419] + NaNMath v0.3.3
  [efe28fd5] + OpenSpecFun_jll v0.5.3+1
  [276daf66] + SpecialFunctions v0.9.0
  [90137ffa] + StaticArrays v0.12.1

julia> using JuMP
[ Info: Precompiling JuMP [4076af6c-e467-56ae-b986-b466b2749572]
ERROR: LoadError: Failed to precompile MathOptInterface [b8f27783-ece8-5eb3-8dc8-9495eed66fee] to /home/ubuntu/.julia/compiled/v1.3/MathOptInterface/tyub8_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917
 [6] include at ./boot.jl:328 [inlined]
 [7] include_relative(::Module, ::String) at ./loading.jl:1105
 [8] include(::Module, ::String) at ./Base.jl:31
 [9] top-level scope at none:2
 [10] eval at ./boot.jl:330 [inlined]
 [11] eval(::Expr) at ./client.jl:425
 [12] top-level scope at ./none:3
in expression starting at /home/ubuntu/.julia/packages/JuMP/MsUSY/src/JuMP.jl:16
ERROR: Failed to precompile JuMP [4076af6c-e467-56ae-b986-b466b2749572] to /home/ubuntu/.julia/compiled/v1.3/JuMP/DmXqY_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917

odow · January 9, 2020, 4:45pm

It’s weird that it doesn’t give a more specific error message.

Try Pkg.build("JuMP"). Or try deleting ~/.julia/compiled.

newstatement · January 9, 2020, 7:12pm

Still with the error. I believe it is some dependency on Ubuntu Desktop not present on Ubuntu Server.

miles.lubin · January 9, 2020, 7:18pm

I’d recommend deleting ~/.julia completely and posting the log of Pkg.add("JuMP"); using JuMP.

newstatement · January 9, 2020, 11:41pm

ubuntu@ip-172-31-12-156:~$ ls -a
.   .bash_history  .bashrc  .gnupg  .profile  .sudo_as_admin_successful  academic   gurobi8.1.1_linux64.tar.gz  gurobi9.0.0_linux64.tar.gz  julia-1.3.0-linux-x86_64.tar.gz  mybash.txt
..  .bash_logout   .cache   .julia  .ssh      .wget-hsts                 file1.txt  gurobi811                   gurobi900                   julia-1.3.1-linux-x86_64.tar.gz
ubuntu@ip-172-31-12-156:~$ rm -rf .julia
ubuntu@ip-172-31-12-156:~$ cd .julia
-bash: cd: .julia: No such file or directory
ubuntu@ip-172-31-12-156:~$
ubuntu@ip-172-31-12-156:~$ julia
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _  |  |
  | | |_| | | | (_| |  |  Version 1.3.1 (2019-12-30)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

(v1.3) pkg> add JuMP
   Cloning default registries into `~/.julia`
   Cloning registry from "https://github.com/JuliaRegistries/General.git"
     Added registry `General` to `~/.julia/registries/General`
 Resolving package versions...
 Installed NaNMath ────────────── v0.3.3
 Installed DiffResults ────────── v1.0.2
 Installed CodecBzip2 ─────────── v0.6.0
 Installed DiffRules ──────────── v1.0.0
 Installed CodecZlib ──────────── v0.6.0
 Installed HTTP ───────────────── v0.8.8
 Installed JuMP ───────────────── v0.20.1
 Installed BenchmarkTools ─────── v0.4.3
 Installed DataStructures ─────── v0.17.7
 Installed ForwardDiff ────────── v0.10.8
 Installed StaticArrays ───────── v0.12.1
 Installed MutableArithmetics ─── v0.2.0
 Installed MbedTLS ────────────── v0.7.0
 Installed MathOptInterface ───── v0.9.9
 Installed SpecialFunctions ───── v0.9.0
 Installed Parsers ────────────── v0.3.10
 Installed TranscodingStreams ─── v0.9.5
 Installed JSON ───────────────── v0.21.0
 Installed OrderedCollections ─── v1.1.0
 Installed BinaryProvider ─────── v0.5.8
 Installed JSONSchema ─────────── v0.2.0
 Installed IniFile ────────────── v0.5.0
 Installed CommonSubexpressions ─ v0.2.0
 Installed OpenSpecFun_jll ────── v0.5.3+1
 Installed Calculus ───────────── v0.5.1
  Updating `~/.julia/environments/v1.3/Project.toml`
  [4076af6c] + JuMP v0.20.1
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [6e4b80f9] + BenchmarkTools v0.4.3
  [b99e7846] + BinaryProvider v0.5.8
  [49dc2e85] + Calculus v0.5.1
  [523fee87] + CodecBzip2 v0.6.0
  [944b1d66] + CodecZlib v0.6.0
  [bbf7d656] + CommonSubexpressions v0.2.0
  [864edb3b] + DataStructures v0.17.7
  [163ba53b] + DiffResults v1.0.2
  [b552c78f] + DiffRules v1.0.0
  [f6369f11] + ForwardDiff v0.10.8
  [cd3eb016] + HTTP v0.8.8
  [83e8ac13] + IniFile v0.5.0
  [682c06a0] + JSON v0.21.0
  [7d188eb4] + JSONSchema v0.2.0
  [4076af6c] + JuMP v0.20.1
  [b8f27783] + MathOptInterface v0.9.9
  [739be429] + MbedTLS v0.7.0
  [d8a4904e] + MutableArithmetics v0.2.0
  [77ba4419] + NaNMath v0.3.3
  [efe28fd5] + OpenSpecFun_jll v0.5.3+1
  [bac558e1] + OrderedCollections v1.1.0
  [69de0a69] + Parsers v0.3.10
  [276daf66] + SpecialFunctions v0.9.0
  [90137ffa] + StaticArrays v0.12.1
  [3bb67fe8] + TranscodingStreams v0.9.5
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [8ba89e20] + Distributed
  [b77e0a4c] + InteractiveUtils
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [44cfe95a] + Pkg
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA
  [9e88b42a] + Serialization
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays
  [10745b16] + Statistics
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  Building MbedTLS ───→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
  Building CodecBzip2 → `~/.julia/packages/CodecBzip2/T5yr7/deps/build.log`
  Building CodecZlib ─→ `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`

julia> using JuMP
[ Info: Precompiling JuMP [4076af6c-e467-56ae-b986-b466b2749572]
ERROR: LoadError: Failed to precompile MathOptInterface [b8f27783-ece8-5eb3-8dc8-9495eed66fee] to /home/ubuntu/.julia/compiled/v1.3/MathOptInterface/tyub8_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917
 [6] include at ./boot.jl:328 [inlined]
 [7] include_relative(::Module, ::String) at ./loading.jl:1105
 [8] include(::Module, ::String) at ./Base.jl:31
 [9] top-level scope at none:2
 [10] eval at ./boot.jl:330 [inlined]
 [11] eval(::Expr) at ./client.jl:425
 [12] top-level scope at ./none:3
in expression starting at /home/ubuntu/.julia/packages/JuMP/MsUSY/src/JuMP.jl:16
ERROR: Failed to precompile JuMP [4076af6c-e467-56ae-b986-b466b2749572] to /home/ubuntu/.julia/compiled/v1.3/JuMP/DmXqY_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917

julia>

odow · January 10, 2020, 12:58am

I’ve never seen it give no error before. Can you repeat the exercise, but with MathOptInterface directly this time?

Do other packages work? Is this a MathOptInterface specific issue?

ImreSamu · January 10, 2020, 3:00am

t2.micro == 1GB RAM

any other (installed) server process - eating the memory ? ( free -m)
Can you verify - this is not a memory related issue ? ( side effects of low memory )
- testing on t2.medium==4Gb mem

ImreSamu · January 10, 2020, 7:41am

try to add/install ( gfortran , liblapack-dev , libblas-dev ) packages

apt-get install gfortran liblapack-dev libblas-dev
( referenced in the JuMP.jl .travis test file)
see : https://github.com/JuliaOpt/JuMP.jl/blob/master/.travis.yml#L22

newstatement · January 10, 2020, 10:45am

Follows the attempt to install the packages:


Welcome to Ubuntu 18.04.3 LTS (GNU/Linux 4.15.0-1057-aws x86_64)

 * Documentation:  https://help.ubuntu.com
 * Management:     https://landscape.canonical.com
 * Support:        https://ubuntu.com/advantage

  System information as of Fri Jan 10 10:34:54 UTC 2020

  System load:  0.0               Processes:           95
  Usage of /:   41.8% of 7.69GB   Users logged in:     0
  Memory usage: 19%               IP address for eth0: 172.31.12.156
  Swap usage:   0%

 * Overheard at KubeCon: "microk8s.status just blew my mind".

     https://microk8s.io/docs/commands#microk8s.status

 * Canonical Livepatch is available for installation.
   - Reduce system reboots and improve kernel security. Activate at:
     https://ubuntu.com/livepatch

0 packages can be updated.
0 updates are security updates.

ubuntu@ip-172-31-12-156:~$ sudo apt-get install gfortran liblapack-dev libblas-dev
Reading package lists... Done
Building dependency tree       
Reading state information... Done
The following package was automatically installed and is no longer required:
  libdumbnet1
Use 'sudo apt autoremove' to remove it.
The following additional packages will be installed:
  binutils binutils-common
  binutils-x86-64-linux-gnu cpp cpp-7 gcc gcc-7
  gcc-7-base gfortran-7 libasan4 libatomic1
  libbinutils libblas3 libc-dev-bin libc6-dev
  libcc1-0 libcilkrts5 libgcc-7-dev
  libgfortran-7-dev libgfortran4 libgomp1
  libisl19 libitm1 liblapack3 liblsan0 libmpc3
  libmpx2 libquadmath0 libtsan0 libubsan0
  linux-libc-dev manpages-dev
Suggested packages:
  binutils-doc cpp-doc gcc-7-locales gcc-multilib
  make autoconf automake libtool flex bison gdb
  gcc-doc gcc-7-multilib gcc-7-doc libgcc1-dbg
  libgomp1-dbg libitm1-dbg libatomic1-dbg
  libasan4-dbg liblsan0-dbg libtsan0-dbg
  libubsan0-dbg libcilkrts5-dbg libmpx2-dbg
  libquadmath0-dbg gfortran-multilib gfortran-doc
  gfortran-7-multilib gfortran-7-doc
  libgfortran4-dbg libcoarrays-dev liblapack-doc
  glibc-doc
The following NEW packages will be installed:
  binutils binutils-common
  binutils-x86-64-linux-gnu cpp cpp-7 gcc gcc-7
  gcc-7-base gfortran gfortran-7 libasan4
  libatomic1 libbinutils libblas-dev libblas3
  libc-dev-bin libc6-dev libcc1-0 libcilkrts5
  libgcc-7-dev libgfortran-7-dev libgfortran4
  libgomp1 libisl19 libitm1 liblapack-dev
  liblapack3 liblsan0 libmpc3 libmpx2
  libquadmath0 libtsan0 libubsan0 linux-libc-dev
  manpages-dev
0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded.
Need to get 39.6 MB of archives.
After this operation, 166 MB of additional disk space will be used.
Do you want to continue? [Y/n] Y
Get:1 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 binutils-common amd64 2.30-21ubuntu1~18.04.2 [193 kB]
Get:2 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 libbinutils amd64 2.30-21ubuntu1~18.04.2 [503 kB]
Get:3 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 binutils-x86-64-linux-gnu amd64 2.30-21ubuntu1~18.04.2 [1856 kB]
Get:4 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 binutils amd64 2.30-21ubuntu1~18.04.2 [3396 B]
Get:5 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 gcc-7-base amd64 7.4.0-1ubuntu1~18.04.1 [18.9 kB]
Get:6 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic/main amd64 libisl19 amd64 0.19-1 [551 kB]
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Get:8 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 cpp-7 amd64 7.4.0-1ubuntu1~18.04.1 [6742 kB]
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Get:13 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 libatomic1 amd64 8.3.0-6ubuntu1~18.04.1 [9184 B]
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Get:15 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 liblsan0 amd64 8.3.0-6ubuntu1~18.04.1 [133 kB]
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Get:17 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 libubsan0 amd64 7.4.0-1ubuntu1~18.04.1 [126 kB]
Get:18 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 libcilkrts5 amd64 7.4.0-1ubuntu1~18.04.1 [42.5 kB]
Get:19 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 libmpx2 amd64 8.3.0-6ubuntu1~18.04.1 [11.6 kB]
Get:20 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 libquadmath0 amd64 8.3.0-6ubuntu1~18.04.1 [133 kB]
Get:21 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 libgcc-7-dev amd64 7.4.0-1ubuntu1~18.04.1 [2381 kB]
Get:22 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 gcc-7 amd64 7.4.0-1ubuntu1~18.04.1 [7463 kB]
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Get:24 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 libgfortran4 amd64 7.4.0-1ubuntu1~18.04.1 [492 kB]
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Get:26 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic/main amd64 libc-dev-bin amd64 2.27-3ubuntu1 [71.8 kB]
Get:27 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 linux-libc-dev amd64 4.15.0-74.84 [1015 kB]
Get:28 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic/main amd64 libc6-dev amd64 2.27-3ubuntu1 [2587 kB]
Get:29 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 gfortran-7 amd64 7.4.0-1ubuntu1~18.04.1 [7112 kB]
Get:30 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic-updates/main amd64 gfortran amd64 4:7.4.0-1ubuntu2.3 [1356 B]
Get:31 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic/main amd64 libblas3 amd64 3.7.1-4ubuntu1 [140 kB]
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Get:35 http://sa-east-1.ec2.archive.ubuntu.com/ubuntu bionic/main amd64 manpages-dev all 4.15-1 [2217 kB]
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update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
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update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
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update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
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ubuntu@ip-172-31-12-156:~$ julia
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _  |  |
  | | |_| | | | (_| |  |  Version 1.3.1 (2019-12-30)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

julia> using JuMP
[ Info: Precompiling JuMP [4076af6c-e467-56ae-b986-b466b2749572]
ERROR: LoadError: Failed to precompile MathOptInterface [b8f27783-ece8-5eb3-8dc8-9495eed66fee] to /home/ubuntu/.julia/compiled/v1.3/MathOptInterface/tyub8_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917
 [6] include at ./boot.jl:328 [inlined]
 [7] include_relative(::Module, ::String) at ./loading.jl:1105
 [8] include(::Module, ::String) at ./Base.jl:31
 [9] top-level scope at none:2
 [10] eval at ./boot.jl:330 [inlined]
 [11] eval(::Expr) at ./client.jl:425
 [12] top-level scope at ./none:3
in expression starting at /home/ubuntu/.julia/packages/JuMP/MsUSY/src/JuMP.jl:16
ERROR: Failed to precompile JuMP [4076af6c-e467-56ae-b986-b466b2749572] to /home/ubuntu/.julia/compiled/v1.3/JuMP/DmXqY_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917

(v1.3) pkg> rm JuMP
  Updating `~/.julia/environments/v1.3/Project.toml`
  [4076af6c] - JuMP v0.20.1
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [6e4b80f9] - BenchmarkTools v0.4.3
  [b99e7846] - BinaryProvider v0.5.8
  [49dc2e85] - Calculus v0.5.1
  [523fee87] - CodecBzip2 v0.6.0
  [944b1d66] - CodecZlib v0.6.0
  [bbf7d656] - CommonSubexpressions v0.2.0
  [864edb3b] - DataStructures v0.17.7
  [163ba53b] - DiffResults v1.0.2
  [b552c78f] - DiffRules v1.0.0
  [f6369f11] - ForwardDiff v0.10.8
  [cd3eb016] - HTTP v0.8.8
  [83e8ac13] - IniFile v0.5.0
  [682c06a0] - JSON v0.21.0
  [7d188eb4] - JSONSchema v0.2.0
  [4076af6c] - JuMP v0.20.1
  [b8f27783] - MathOptInterface v0.9.9
  [739be429] - MbedTLS v0.7.0
  [d8a4904e] - MutableArithmetics v0.2.0
  [77ba4419] - NaNMath v0.3.3
  [efe28fd5] - OpenSpecFun_jll v0.5.3+1
  [bac558e1] - OrderedCollections v1.1.0
  [69de0a69] - Parsers v0.3.10
  [276daf66] - SpecialFunctions v0.9.0
  [90137ffa] - StaticArrays v0.12.1
  [3bb67fe8] - TranscodingStreams v0.9.5
  [2a0f44e3] - Base64 
  [ade2ca70] - Dates 
  [8ba89e20] - Distributed 
  [b77e0a4c] - InteractiveUtils 
  [76f85450] - LibGit2 
  [8f399da3] - Libdl 
  [37e2e46d] - LinearAlgebra 
  [56ddb016] - Logging 
  [d6f4376e] - Markdown 
  [a63ad114] - Mmap 
  [44cfe95a] - Pkg 
  [de0858da] - Printf 
  [3fa0cd96] - REPL 
  [9a3f8284] - Random 
  [ea8e919c] - SHA 
  [9e88b42a] - Serialization 
  [6462fe0b] - Sockets 
  [2f01184e] - SparseArrays 
  [10745b16] - Statistics 
  [8dfed614] - Test 
  [cf7118a7] - UUIDs 
  [4ec0a83e] - Unicode 

(v1.3) pkg> rm MathOptInterface
ERROR: The following package names could not be resolved:
 * MathOptInterface (not found in project or manifest)
Please specify by known `name=uuid`.

(v1.3) pkg> add JuMP
  Updating registry at `~/.julia/registries/General`
  Updating git-repo `https://github.com/JuliaRegistries/General.git`
    Fetching: [>                                       [==================================== Resolving package versions...
  Updating `~/.julia/environments/v1.3/Project.toml`
  [4076af6c] + JuMP v0.20.1
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [6e4b80f9] + BenchmarkTools v0.4.3
  [b99e7846] + BinaryProvider v0.5.8
  [49dc2e85] + Calculus v0.5.1
  [523fee87] + CodecBzip2 v0.6.0
  [944b1d66] + CodecZlib v0.6.0
  [bbf7d656] + CommonSubexpressions v0.2.0
  [864edb3b] + DataStructures v0.17.7
  [163ba53b] + DiffResults v1.0.2
  [b552c78f] + DiffRules v1.0.0
  [f6369f11] + ForwardDiff v0.10.8
  [cd3eb016] + HTTP v0.8.8
  [83e8ac13] + IniFile v0.5.0
  [682c06a0] + JSON v0.21.0
  [7d188eb4] + JSONSchema v0.2.0
  [4076af6c] + JuMP v0.20.1
  [b8f27783] + MathOptInterface v0.9.9
  [739be429] + MbedTLS v0.7.0
  [d8a4904e] + MutableArithmetics v0.2.0
  [77ba4419] + NaNMath v0.3.3
  [efe28fd5] + OpenSpecFun_jll v0.5.3+1
  [bac558e1] + OrderedCollections v1.1.0
  [69de0a69] + Parsers v0.3.10
  [276daf66] + SpecialFunctions v0.9.0
  [90137ffa] + StaticArrays v0.12.1
  [3bb67fe8] + TranscodingStreams v0.9.5
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 

julia> using JuMP
[ Info: Precompiling JuMP [4076af6c-e467-56ae-b986-b466b2749572]
ERROR: LoadError: Failed to precompile MathOptInterface [b8f27783-ece8-5eb3-8dc8-9495eed66fee] to /home/ubuntu/.julia/compiled/v1.3/MathOptInterface/tyub8_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917
 [6] include at ./boot.jl:328 [inlined]
 [7] include_relative(::Module, ::String) at ./loading.jl:1105
 [8] include(::Module, ::String) at ./Base.jl:31
 [9] top-level scope at none:2
 [10] eval at ./boot.jl:330 [inlined]
 [11] eval(::Expr) at ./client.jl:425
 [12] top-level scope at ./none:3
in expression starting at /home/ubuntu/.julia/packages/JuMP/MsUSY/src/JuMP.jl:16
ERROR: Failed to precompile JuMP [4076af6c-e467-56ae-b986-b466b2749572] to /home/ubuntu/.julia/compiled/v1.3/JuMP/DmXqY_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917

julia>

I also tried removing before the ~/.julia folder and adding the JuMP package again. And I also tested with the Cbc package and the same error occurs with MathOptInterface. It’s probably some dependency on this package but not reported in JuMP dependencies.


ubuntu@ip-172-31-12-156:~$ ls .julia
artifacts  environments  packages
compiled   logs          registries
ubuntu@ip-172-31-12-156:~$ rm -rf .julia
ubuntu@ip-172-31-12-156:~$ julia
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _  |  |
  | | |_| | | | (_| |  |  Version 1.3.1 (2019-12-30)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

(v1.3) pkg> add JuMP
   Cloning default registries into `~/.julia`
   Cloning registry from "https://github.com/JuliaRegistries/General.git"
    Fetching: [>                                       Fetching: [=>                                                                 Fetching: [====================================     Added registry `General` to `~/.julia/registries/General`
 Resolving package versions...
 Installed NaNMath ────────────── v0.3.3
 Installed DiffResults ────────── v1.0.2
 Installed CodecBzip2 ─────────── v0.6.0
 Installed CodecZlib ──────────── v0.6.0
 Installed MbedTLS ────────────── v0.7.0
 Installed DiffRules ──────────── v1.0.0
 Installed HTTP ───────────────── v0.8.8
 Installed JuMP ───────────────── v0.20.1
 Installed DataStructures ─────── v0.17.7
 Installed BenchmarkTools ─────── v0.4.3
 Installed SpecialFunctions ───── v0.9.0
 Installed MathOptInterface ───── v0.9.9
 Installed MutableArithmetics ─── v0.2.0
 Installed StaticArrays ───────── v0.12.1
 Installed ForwardDiff ────────── v0.10.8
 Installed Parsers ────────────── v0.3.10
 Installed JSONSchema ─────────── v0.2.0
 Installed JSON ───────────────── v0.21.0
 Installed IniFile ────────────── v0.5.0
 Installed OrderedCollections ─── v1.1.0
 Installed CommonSubexpressions ─ v0.2.0
 Installed Calculus ───────────── v0.5.1
 Installed TranscodingStreams ─── v0.9.5
 Installed OpenSpecFun_jll ────── v0.5.3+1
 Installed BinaryProvider ─────── v0.5.8
  Updating `~/.julia/environments/v1.3/Project.toml`
  [4076af6c] + JuMP v0.20.1
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [6e4b80f9] + BenchmarkTools v0.4.3
  [b99e7846] + BinaryProvider v0.5.8
  [49dc2e85] + Calculus v0.5.1
  [523fee87] + CodecBzip2 v0.6.0
  [944b1d66] + CodecZlib v0.6.0
  [bbf7d656] + CommonSubexpressions v0.2.0
  [864edb3b] + DataStructures v0.17.7
  [163ba53b] + DiffResults v1.0.2
  [b552c78f] + DiffRules v1.0.0
  [f6369f11] + ForwardDiff v0.10.8
  [cd3eb016] + HTTP v0.8.8
  [83e8ac13] + IniFile v0.5.0
  [682c06a0] + JSON v0.21.0
  [7d188eb4] + JSONSchema v0.2.0
  [4076af6c] + JuMP v0.20.1
  [b8f27783] + MathOptInterface v0.9.9
  [739be429] + MbedTLS v0.7.0
  [d8a4904e] + MutableArithmetics v0.2.0
  [77ba4419] + NaNMath v0.3.3
  [efe28fd5] + OpenSpecFun_jll v0.5.3+1
  [bac558e1] + OrderedCollections v1.1.0
  [69de0a69] + Parsers v0.3.10
  [276daf66] + SpecialFunctions v0.9.0
  [90137ffa] + StaticArrays v0.12.1
  [3bb67fe8] + TranscodingStreams v0.9.5
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building MbedTLS ───→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
  Building CodecBzip2 → `~/.julia/packages/CodecBzip2/T5yr7/deps/build.log`
  Building CodecZlib ─→ `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`

(v1.3) pkg> add MathOptInterface
 Resolving package versions...
  Updating `~/.julia/environments/v1.3/Project.toml`
  [b8f27783] + MathOptInterface v0.9.9
  Updating `~/.julia/environments/v1.3/Manifest.toml`
 [no changes]

julia> using JuMP
[ Info: Precompiling JuMP [4076af6c-e467-56ae-b986-b466b2749572]
ERROR: LoadError: Failed to precompile MathOptInterface [b8f27783-ece8-5eb3-8dc8-9495eed66fee] to /home/ubuntu/.julia/compiled/v1.3/MathOptInterface/tyub8_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917
 [6] include at ./boot.jl:328 [inlined]
 [7] include_relative(::Module, ::String) at ./loading.jl:1105
 [8] include(::Module, ::String) at ./Base.jl:31
 [9] top-level scope at none:2
 [10] eval at ./boot.jl:330 [inlined]
 [11] eval(::Expr) at ./client.jl:425
 [12] top-level scope at ./none:3
in expression starting at /home/ubuntu/.julia/packages/JuMP/MsUSY/src/JuMP.jl:16
ERROR: Failed to precompile JuMP [4076af6c-e467-56ae-b986-b466b2749572] to /home/ubuntu/.julia/compiled/v1.3/JuMP/DmXqY_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917

(v1.3) pkg> add Cbc
 Resolving package versions...
 Installed Compat ─────── v2.2.0
 Installed Cbc ────────── v0.6.6
 Installed MathProgBase ─ v0.7.7
  Updating `~/.julia/environments/v1.3/Project.toml`
  [9961bab8] + Cbc v0.6.6
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [9961bab8] + Cbc v0.6.6
  [34da2185] + Compat v2.2.0
  [fdba3010] + MathProgBase v0.7.7
  [8bb1440f] + DelimitedFiles 
  [1a1011a3] + SharedArrays 
  Building Cbc → `~/.julia/packages/Cbc/vWzyC/deps/build.log`

julia> using Cbc
[ Info: Precompiling Cbc [9961bab8-2fa3-5c5a-9d89-47fab24efd76]
ERROR: LoadError: LoadError: Failed to precompile MathOptInterface [b8f27783-ece8-5eb3-8dc8-9495eed66fee] to /home/ubuntu/.julia/compiled/v1.3/MathOptInterface/tyub8_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917
 [6] include at ./boot.jl:328 [inlined]
 [7] include_relative(::Module, ::String) at ./loading.jl:1105
 [8] include at ./Base.jl:31 [inlined]
 [9] include(::String) at /home/ubuntu/.julia/packages/Cbc/vWzyC/src/Cbc.jl:1
 [10] top-level scope at /home/ubuntu/.julia/packages/Cbc/vWzyC/src/Cbc.jl:16
 [11] include at ./boot.jl:328 [inlined]
 [12] include_relative(::Module, ::String) at ./loading.jl:1105
 [13] include(::Module, ::String) at ./Base.jl:31
 [14] top-level scope at none:2
 [15] eval at ./boot.jl:330 [inlined]
 [16] eval(::Expr) at ./client.jl:425
 [17] top-level scope at ./none:3
in expression starting at /home/ubuntu/.julia/packages/Cbc/vWzyC/src/MOI_wrapper.jl:1
in expression starting at /home/ubuntu/.julia/packages/Cbc/vWzyC/src/Cbc.jl:16
ERROR: Failed to precompile Cbc [9961bab8-2fa3-5c5a-9d89-47fab24efd76] to /home/ubuntu/.julia/compiled/v1.3/Cbc/ARPfV_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917

julia>

odow · January 10, 2020, 2:40pm

Just try installing MathOptInterface.

rm -rf .Julia
julia
] add MathOptInterface

Try a completely different package unrelated to optimization, e.g., DataFrames, or Distributions, or CSV.

newstatement · January 10, 2020, 4:37pm

Works for DataFrames (I had already tested it because my code uses this package), but not for Distributions. I believe it is due to the instance I am using, which has only 1Gb, and the precompilation uses a lot of ram memory.


(v1.3) pkg> add DataFrames
 Resolving package versions...
  Updating `~/.julia/environments/v1.3/Project.toml`
  [a93c6f00] + DataFrames v0.20.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [324d7699] + CategoricalArrays v0.7.6
  [34da2185] + Compat v3.2.0
  [9a962f9c] + DataAPI v1.1.0
  [a93c6f00] + DataFrames v0.20.0
  [864edb3b] + DataStructures v0.17.7
  [e2d170a0] + DataValueInterfaces v1.0.0
  [41ab1584] + InvertedIndices v1.0.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [e1d29d7a] + Missings v0.4.3
  [bac558e1] + OrderedCollections v1.1.0
  [69de0a69] + Parsers v0.3.10
  [2dfb63ee] + PooledArrays v0.5.3
  [189a3867] + Reexport v0.2.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [3783bdb8] + TableTraits v1.0.0
  [bd369af6] + Tables v0.2.11
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [9fa8497b] + Future 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 

(v1.3) pkg> add Distributions
 Resolving package versions...
 Installed StatsBase ──────── v0.32.0
 Installed StatsFuns ──────── v0.9.3
 Installed QuadGK ─────────── v2.3.1
 Installed Distributions ──── v0.22.0
 Installed Arpack_jll ─────── v3.5.0+2
 Installed Arpack ─────────── v0.4.0
 Installed FillArrays ─────── v0.8.2
 Installed OpenBLAS_jll ───── v0.3.7+4
 Installed SpecialFunctions ─ v0.9.0
 Installed PDMats ─────────── v0.9.10
 Installed BinaryProvider ─── v0.5.8
 Installed OpenSpecFun_jll ── v0.5.3+1
 Installed Rmath ──────────── v0.6.0
  Updating `~/.julia/environments/v1.3/Project.toml`
  [31c24e10] + Distributions v0.22.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [7d9fca2a] + Arpack v0.4.0
  [68821587] + Arpack_jll v3.5.0+2
  [b99e7846] + BinaryProvider v0.5.8
  [31c24e10] + Distributions v0.22.0
  [1a297f60] + FillArrays v0.8.2
  [4536629a] + OpenBLAS_jll v0.3.7+4
  [efe28fd5] + OpenSpecFun_jll v0.5.3+1
  [90014a1f] + PDMats v0.9.10
  [1fd47b50] + QuadGK v2.3.1
  [79098fc4] + Rmath v0.6.0
  [276daf66] + SpecialFunctions v0.9.0
  [2913bbd2] + StatsBase v0.32.0
  [4c63d2b9] + StatsFuns v0.9.3
  [4607b0f0] + SuiteSparse 
  Building Rmath → `~/.julia/packages/Rmath/BoBag/deps/build.log`

julia> using DataFrames
[ Info: Precompiling DataFrames [a93c6f00-e57d-5684-b7b6-d8193f3e46c0]

julia> using Distributions
[ Info: Precompiling Distributions [31c24e10-a181-5473-b8eb-7969acd0382f]
ERROR: could not load library "/opt/julia-1.3.1/lib/julia/sys.so"
/opt/julia-1.3.1/lib/julia/sys.so: failed to map segment from shared object
ERROR: LoadError: LoadError: Failed to precompile OpenBLAS_jll [4536629a-c528-5b80-bd46-f80d51c5b363] to /home/ubuntu/.julia/compiled/v1.3/OpenBLAS_jll/vLkFP_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917
 [6] include at ./boot.jl:328 [inlined]
 [7] include_relative(::Module, ::String) at ./loading.jl:1105
 [8] include at ./Base.jl:31 [inlined]
 [9] include(::String) at /home/ubuntu/.julia/packages/Arpack_jll/HCY9Y/src/Arpack_jll.jl:1
 [10] top-level scope at /home/ubuntu/.julia/packages/Arpack_jll/HCY9Y/src/Arpack_jll.jl:47
 [11] include at ./boot.jl:328 [inlined]
 [12] include_relative(::Module, ::String) at ./loading.jl:1105
 [13] include(::Module, ::String) at ./Base.jl:31
 [14] top-level scope at none:2
 [15] eval at ./boot.jl:330 [inlined]
 [16] eval(::Expr) at ./client.jl:425
 [17] top-level scope at ./none:3
in expression starting at /home/ubuntu/.julia/packages/Arpack_jll/HCY9Y/src/wrappers/x86_64-linux-gnu-libgfortran4.jl:4
in expression starting at /home/ubuntu/.julia/packages/Arpack_jll/HCY9Y/src/Arpack_jll.jl:43
ERROR: LoadError: Failed to precompile Arpack_jll [68821587-b530-5797-8361-c406ea357684] to /home/ubuntu/.julia/compiled/v1.3/Arpack_jll/m4kdm_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917
 [6] include at ./boot.jl:328 [inlined]
 [7] include_relative(::Module, ::String) at ./loading.jl:1105
 [8] include(::Module, ::String) at ./Base.jl:31
 [9] top-level scope at none:2
 [10] eval at ./boot.jl:330 [inlined]
 [11] eval(::Expr) at ./client.jl:425
 [12] top-level scope at ./none:3
in expression starting at /home/ubuntu/.julia/packages/Arpack/o35I5/src/Arpack.jl:8
ERROR: LoadError: LoadError: Failed to precompile Arpack [7d9fca2a-8960-54d3-9f78-7d1dccf2cb97] to /home/ubuntu/.julia/compiled/v1.3/Arpack/X5VZL_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917
 [6] include at ./boot.jl:328 [inlined]
 [7] include_relative(::Module, ::String) at ./loading.jl:1105
 [8] include at ./Base.jl:31 [inlined]
 [9] include(::String) at /home/ubuntu/.julia/packages/PDMats/nKT0N/src/PDMats.jl:1
 [10] top-level scope at /home/ubuntu/.julia/packages/PDMats/nKT0N/src/PDMats.jl:52
 [11] include at ./boot.jl:328 [inlined]
 [12] include_relative(::Module, ::String) at ./loading.jl:1105
 [13] include(::Module, ::String) at ./Base.jl:31
 [14] top-level scope at none:2
 [15] eval at ./boot.jl:330 [inlined]
 [16] eval(::Expr) at ./client.jl:425
 [17] top-level scope at ./none:3
in expression starting at /home/ubuntu/.julia/packages/PDMats/nKT0N/src/pdsparsemat.jl:1
in expression starting at /home/ubuntu/.julia/packages/PDMats/nKT0N/src/PDMats.jl:51
ERROR: LoadError: Failed to precompile PDMats [90014a1f-27ba-587c-ab20-58faa44d9150] to /home/ubuntu/.julia/compiled/v1.3/PDMats/wuzEE_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917
 [6] include at ./boot.jl:328 [inlined]
 [7] include_relative(::Module, ::String) at ./loading.jl:1105
 [8] include(::Module, ::String) at ./Base.jl:31
 [9] top-level scope at none:2
 [10] eval at ./boot.jl:330 [inlined]
 [11] eval(::Expr) at ./client.jl:425
 [12] top-level scope at ./none:3
in expression starting at /home/ubuntu/.julia/packages/Distributions/gA9p1/src/Distributions.jl:3
ERROR: Failed to precompile Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] to /home/ubuntu/.julia/compiled/v1.3/Distributions/xILW0_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917

julia>

newstatement · February 4, 2020, 11:12am

News:
I started a virtual machine with VirtualBox with only 1Gb of RAM and installed ubuntu server 18.04. I installed Julia and the JuMP package and I have the big surprise: I could load and precompile JuMP with no problems!