Heatmap weird error in Plots.jl

New to Julia
, ,
1

Hi ,

I would like to ask for your support cause I am getting an error I have never seen before.

My code…


using Plots
gr()

xs = [string("x", i) for i = 1:10]
ys = [string("y", i) for i = 1:4]
z = float((1:4) * reshape(1:10, 1, :))
heatmap(xs, ys, z, aspect_ratio = 1)

I obtain this error

Illegal inttoptr
      %33 = ptrtoint double addrspace(13)* %32 to i64
Illegal inttoptr
      %52 = inttoptr i64 %51 to i8 addrspace(13)*

signal (6): Aborted
in expression starting at none:0
gsignal at /usr/bin/../lib/x86_64-linux-gnu/libc.so.6 (unknown line)
abort at /usr/bin/../lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x7fd215f7cd04)
_ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /usr/bin/../lib/x86_64-linux-gnu/libLLVM-8.so.1 (unknown line)
_ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /usr/bin/../lib/x86_64-linux-gnu/libLLVM-8.so.1 (unknown line)
_ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /usr/bin/../lib/x86_64-linux-gnu/libLLVM-8.so.1 (unknown line)
unknown function (ip: 0x7fd216066ac1)
unknown function (ip: 0x7fd2160692d8)
unknown function (ip: 0x7fd2160698cd)
unknown function (ip: 0x7fd215fa4b4a)
unknown function (ip: 0x7fd215fd5ed3)
unknown function (ip: 0x7fd215ffb84b)
jl_invoke at /usr/bin/../lib/x86_64-linux-gnu/libjulia.so.1 (unknown line)
permutedims at ./multidimensional.jl:1397 [inlined]
transpose_z at /home/vmh/.julia/packages/Plots/LWw1t/src/utils.jl:353
unknown function (ip: 0x7fd1e429b03d)
gr_display at /home/vmh/.julia/packages/Plots/LWw1t/src/backends/gr.jl:1634
unknown function (ip: 0x7fd1e4279f68)
gr_display at /home/vmh/.julia/packages/Plots/LWw1t/src/backends/gr.jl:678
_show at /home/vmh/.julia/packages/Plots/LWw1t/src/backends/gr.jl:1975
_showjuno at /home/vmh/.julia/packages/Plots/LWw1t/src/output.jl:276 [inlined]
showjuno at /home/vmh/.julia/packages/Plots/LWw1t/src/output.jl:260
show at /home/vmh/.julia/packages/Plots/LWw1t/src/output.jl:212
unknown function (ip: 0x7fd216006df8)
#base64encode#3 at /build/julia-98cBbp/julia-1.4.1+dfsg/usr/share/julia/stdlib/v1.4/Base64/src/encode.jl:208
base64encode##kw at /build/julia-98cBbp/julia-1.4.1+dfsg/usr/share/julia/stdlib/v1.4/Base64/src/encode.jl:203 [inlined]
_binstringmime at /build/julia-98cBbp/julia-1.4.1+dfsg/usr/share/julia/stdlib/v1.4/Base64/src/Base64.jl:46 [inlined]
#stringmime#6 at /build/julia-98cBbp/julia-1.4.1+dfsg/usr/share/julia/stdlib/v1.4/Base64/src/Base64.jl:43
stringmime##kw at /build/julia-98cBbp/julia-1.4.1+dfsg/usr/share/julia/stdlib/v1.4/Base64/src/Base64.jl:43
#stringmime#7 at /build/julia-98cBbp/julia-1.4.1+dfsg/usr/share/julia/stdlib/v1.4/Base64/src/Base64.jl:44
stringmime##kw at /build/julia-98cBbp/julia-1.4.1+dfsg/usr/share/julia/stdlib/v1.4/Base64/src/Base64.jl:44 [inlined]
displayinplotpane at /home/vmh/.julia/packages/Atom/27HB0/src/display/showdisplay.jl:84
displayandrender at /home/vmh/.julia/packages/Atom/27HB0/src/display/showdisplay.jl:131
#204 at /home/vmh/.julia/packages/Atom/27HB0/src/eval.jl:136
unknown function (ip: 0x7fd216006df8)
jl_f__apply_latest at /usr/bin/../lib/x86_64-linux-gnu/libjulia.so.1 (unknown line)
#invokelatest#1 at ./essentials.jl:712 [inlined]
invokelatest at ./essentials.jl:711 [inlined]
macro expansion at /home/vmh/.julia/packages/Media/ItEPc/src/dynamic.jl:24 [inlined]
eval at /home/vmh/.julia/packages/Atom/27HB0/src/eval.jl:113
unknown function (ip: 0x7fd1e52b1bda)
unknown function (ip: 0x7fd216006df8)
jl_f__apply_latest at /usr/bin/../lib/x86_64-linux-gnu/libjulia.so.1 (unknown line)
#invokelatest#1 at ./essentials.jl:712
unknown function (ip: 0x7fd216006df8)
invokelatest at ./essentials.jl:711
unknown function (ip: 0x7fd216006df8)
macro expansion at /home/vmh/.julia/packages/Atom/27HB0/src/eval.jl:41 [inlined]
#184 at ./task.jl:358
unknown function (ip: 0x7fd200230bcc)
unknown function (ip: 0x7fd216013cbb)
unknown function (ip: (nil))
Allocations: 117403001 (Pool: 117374477; Big: 28524); GC: 118

What is this ?
How do I fix it ?

Thank you

2

what is your Plots version and Julia version? this code runs fine in my environment

image
image1279×487 99.7 KB

Julia 1.5
Plots v1.5.8
3

Thanks for coming

My julia is

versioninfo()
Julia Version 1.4.1
Platform Info:
  OS: Linux (x86_64-linux-gnu)
  CPU: Intel(R) Core(TM) i5-7200U CPU @ 2.50GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
  JULIA_DEPOT_PATH = /home/vmh/.julia
  JULIA_EDITOR = atom  -a
  JULIA_NUM_THREADS = 2

And Plots

Pkg.installed()

"Plots"          => v"1.5.7"
4

Thanks for coming

My julia is

versioninfo()
Julia Version 1.4.1
Platform Info:
  OS: Linux (x86_64-linux-gnu)
  CPU: Intel(R) Core(TM) i5-7200U CPU @ 2.50GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
  JULIA_DEPOT_PATH = /home/vmh/.julia
  JULIA_EDITOR = atom  -a
  JULIA_NUM_THREADS = 2

And Plots

Pkg.installed()

"Plots"          => v"1.5.7"
5

@jling I installed Plot last version by

pkg> add Plots#master

And I got

Pkg.installed()

 "Plots"          => v"1.5.9"

But I get an error, something quite similar

Illegal inttoptr
      %33 = ptrtoint double addrspace(13)* %32 to i64
Illegal inttoptr
      %52 = inttoptr i64 %51 to i8 addrspace(13)*

signal (6): Aborted
in expression starting at none:0
gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x7fcc37e61d04)
_ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /lib/x86_64-linux-gnu/libLLVM-8.so.1 (unknown line)
_ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /lib/x86_64-linux-gnu/libLLVM-8.so.1 (unknown line)
_ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /lib/x86_64-linux-gnu/libLLVM-8.so.1 (unknown line)
unknown function (ip: 0x7fcc37f4bac1)
unknown function (ip: 0x7fcc37f4e2d8)
unknown function (ip: 0x7fcc37f4e8cd)
unknown function (ip: 0x7fcc37e89b4a)
unknown function (ip: 0x7fcc37ebaed3)
unknown function (ip: 0x7fcc37ee084b)
jl_invoke at /lib/x86_64-linux-gnu/libjulia.so.1 (unknown line)
permutedims at ./multidimensional.jl:1397 [inlined]
transpose_z at /home/vmh/.julia/packages/Plots/shY1Z/src/utils.jl:353
unknown function (ip: 0x7fcc05076a3d)
gr_display at /home/vmh/.julia/packages/Plots/shY1Z/src/backends/gr.jl:1634
unknown function (ip: 0x7fcc050530a8)
gr_display at /home/vmh/.julia/packages/Plots/shY1Z/src/backends/gr.jl:678
_show at /home/vmh/.julia/packages/Plots/shY1Z/src/backends/gr.jl:1975
_showjuno at /home/vmh/.julia/packages/Plots/shY1Z/src/output.jl:276 [inlined]
showjuno at /home/vmh/.julia/packages/Plots/shY1Z/src/output.jl:260
show at /home/vmh/.julia/packages/Plots/shY1Z/src/output.jl:212
unknown function (ip: 0x7fcc37eebdf8)
#base64encode#3 at /build/julia-98cBbp/julia-1.4.1+dfsg/usr/share/julia/stdlib/v1.4/Base64/src/encode.jl:208
base64encode##kw at /build/julia-98cBbp/julia-1.4.1+dfsg/usr/share/julia/stdlib/v1.4/Base64/src/encode.jl:203 [inlined]
_binstringmime at /build/julia-98cBbp/julia-1.4.1+dfsg/usr/share/julia/stdlib/v1.4/Base64/src/Base64.jl:46 [inlined]
#stringmime#6 at /build/julia-98cBbp/julia-1.4.1+dfsg/usr/share/julia/stdlib/v1.4/Base64/src/Base64.jl:43
stringmime##kw at /build/julia-98cBbp/julia-1.4.1+dfsg/usr/share/julia/stdlib/v1.4/Base64/src/Base64.jl:43
#stringmime#7 at /build/julia-98cBbp/julia-1.4.1+dfsg/usr/share/julia/stdlib/v1.4/Base64/src/Base64.jl:44
stringmime##kw at /build/julia-98cBbp/julia-1.4.1+dfsg/usr/share/julia/stdlib/v1.4/Base64/src/Base64.jl:44 [inlined]
displayinplotpane at /home/vmh/.julia/packages/Atom/27HB0/src/display/showdisplay.jl:84
displayandrender at /home/vmh/.julia/packages/Atom/27HB0/src/display/showdisplay.jl:131
#204 at /home/vmh/.julia/packages/Atom/27HB0/src/eval.jl:136
unknown function (ip: 0x7fcc37eebdf8)
jl_f__apply_latest at /lib/x86_64-linux-gnu/libjulia.so.1 (unknown line)
#invokelatest#1 at ./essentials.jl:712 [inlined]
invokelatest at ./essentials.jl:711 [inlined]
macro expansion at /home/vmh/.julia/packages/Media/ItEPc/src/dynamic.jl:24 [inlined]
eval at /home/vmh/.julia/packages/Atom/27HB0/src/eval.jl:113
unknown function (ip: 0x7fcc06dc42fa)
unknown function (ip: 0x7fcc37eebdf8)
jl_f__apply_latest at /lib/x86_64-linux-gnu/libjulia.so.1 (unknown line)
#invokelatest#1 at ./essentials.jl:712
unknown function (ip: 0x7fcc37eebdf8)
invokelatest at ./essentials.jl:711
unknown function (ip: 0x7fcc37eebdf8)
macro expansion at /home/vmh/.julia/packages/Atom/27HB0/src/eval.jl:41 [inlined]
#184 at ./task.jl:358
unknown function (ip: 0x7fcc22125abc)
unknown function (ip: 0x7fcc37ef8cbb)
unknown function (ip: (nil))
Allocations: 120983022 (Pool: 120953181; Big: 29841); GC: 117
6

try Julia 1.5 then, this indeed looks very weird, you may want to open and issue on github

7

Thank you very much @jling
I am afraid I do not know how open an issue, but I would it if you think it may be of benefit

8

Julia 1.5 solved the situation

1 Like