The complexity of extracting a sparse submatrix
A[i,j] of size k x l from a large sparse matrix of size n with nnz entries should be O(k log k + l nz log k).
Accessing my sparse matrices seemed very slow and I checked the algorithms… They seem fairly optimized but the complexity does not match the one I stated above. I ran some benchmarks, keeping the number nonzero entries per column constant, as well as the k x l submatrix, while scaling the overall problem size. It seems that the problem scales linearly with the problem size, which should be avoided at all cost!
Is this a misunderstanding on my side/did I miss something? Could someone explain to me the dependency on the total size of the matrix? In my opinion this shouldn’t be happening with CSC matrices.
I have uploaded my tests online, you can run them as Pluto notebook or just as a script: