I’m attempting to follow these tutorials, but when it comes time to add these packages:
BenchmarkTools
DataFrames
DelimitedFiles
CSV
XLSX
Downloads
I get into an error when trying to add the RCall dependancy. I try the following
ENV["R_HOME"] = ""
using Pkg
Pkg.add("RCall")
Pkg.build("RCall")
But it runs into the following error and stacktrace at Pkg.add("RCall"):
ERROR: Error building `RCall`:
ERROR: LoadError: R_HOME is not a directory.
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] top-level scope
@ ~/.julia/packages/RCall/6kphM/deps/build.jl:53
[3] include(fname::String)
@ Base.MainInclude ./client.jl:451
[4] top-level scope
@ none:5
in expression starting at /home/aaportel/.julia/packages/RCall/6kphM/deps/build.jl:11
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types ~/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Types.jl:68
[2] (::Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec})()
@ Pkg.Operations ~/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:962
[3] withenv(::Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, ::Pair{String, String}, ::Vararg{Pair{String}})
@ Base ./env.jl:172
[4] (::Pkg.Operations.var"#99#103"{String, Bool, Bool, Bool, Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec})()
@ Pkg.Operations ~/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1506
[5] with_temp_env(fn::Pkg.Operations.var"#99#103"{String, Bool, Bool, Bool, Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec}, temp_env::String)
@ Pkg.Operations ~/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1390
[6] (::Pkg.Operations.var"#98#102"{Bool, Bool, Bool, Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String})(tmp::String)
@ Pkg.Operations ~/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1469
[7] mktempdir(fn::Pkg.Operations.var"#98#102"{Bool, Bool, Bool, Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String}, parent::String; prefix::String)
@ Base.Filesystem ./file.jl:750
[8] mktempdir(fn::Function, parent::String) (repeats 2 times)
@ Base.Filesystem ./file.jl:748
[9] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Pkg.Types.Project; force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
@ Pkg.Operations ~/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1435
[10] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Pkg.Types.Project)
@ Pkg.Operations ~/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1432
[11] build_versions(ctx::Pkg.Types.Context, uuids::Set{Base.UUID}; verbose::Bool)
@ Pkg.Operations ~/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:943
[12] build(ctx::Pkg.Types.Context, uuids::Set{Base.UUID}, verbose::Bool)
@ Pkg.Operations ~/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:822
[13] build(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; verbose::Bool, kwargs::Base.Pairs{Symbol, Base.TTY, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.TTY}}})
@ Pkg.API ~/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:992
[14] build(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.TTY, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API ~/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:149
[15] build(pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API ~/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:144
[16] #build#99
@ ~/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:142 [inlined]
[17] build
@ ~/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:142 [inlined]
[18] #build#98
@ ~/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:141 [inlined]
[19] build(pkg::String)
@ Pkg.API ~/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:141
[20] top-level scope
@ REPL[7]:1
I then try
Pkg.add("Conda")
using Conda
Conda.add("R")
ENV["R_HOME"]="~/.julia/conda/3/bin/R" #location of conda R install
And try the previous steps again and get the same error.
Additional info:
- running on 1.7.3 (link) (direct download)
- not a conda install, nor is there a conda base environment
- operating system is debian based
Thanks for any help y’all can give this tired soul