Hello Julians,
I am trying to track down a dyld error on Apple Silicon when using the UMAP.jl package. Under rosetta it works perfectly well, but in 1.8.2 (native) I get the following error when add-ing and then test-ing UMAP in a clean environment:
(test) pkg> test UMAP
Testing UMAP
# ...
Testing Running tests...
Test Summary: | Pass Total Time
utils tests | 9 9 2.6s
┌ Error: XYAUPD_Exception: IPARAM(7) must be 1,2,3,4.
│ info = -10
└ @ Arpack ~/.julia/packages/Arpack/pLziT/src/libarpack.jl:47
spectral_layout: Error During Test at /Users/cmarcotte/.julia/packages/UMAP/owv5b/test/umap_tests.jl:122
Got exception outside of a @test
Stacktrace:
[1] aupd_wrapper(T::Type, matvecA!::Arpack.var"#18#28"{Symmetric{Float64, SparseMatrixCSC{Float64, Int64}}}, matvecB::Arpack.var"#19#29", solveSI::Arpack.var"#21#31", n::Int64, sym::Bool, cmplx::Bool, bmat::String, nev::Int64, ncv::Int32, which::String, tol::Float64, maxiter::Int64, mode::Int64, v0::Vector{Float64}, check::Int64)
@ Arpack ~/.julia/packages/Arpack/pLziT/src/libarpack.jl:141
[2] _eigs(A::Symmetric{Float64, SparseMatrixCSC{Float64, Int64}}, B::UniformScaling{Bool}; nev::Int64, ncv::Int64, which::Symbol, tol::Float64, maxiter::Int64, sigma::Nothing, v0::Vector{Float64}, ritzvec::Bool, explicittransform::Symbol, check::Int64)
@ Arpack ~/.julia/packages/Arpack/pLziT/src/Arpack.jl:243
[3] #eigs#10
@ ~/.julia/packages/Arpack/pLziT/src/Arpack.jl:51 [inlined]
[4] #eigs#9
@ ~/.julia/packages/Arpack/pLziT/src/Arpack.jl:50 [inlined]
[5] spectral_layout(graph::SparseMatrixCSC{Float64, Int64}, embed_dim::Int64)
@ UMAP ~/.julia/packages/UMAP/owv5b/src/embeddings.jl:53
[6] macro expansion
@ ~/.julia/packages/UMAP/owv5b/test/umap_tests.jl:125 [inlined]
[7] macro expansion
@ /opt/homebrew/Cellar/julia/1.8.2/share/julia/stdlib/v1.8/Test/src/Test.jl:1357 [inlined]
[8] macro expansion
@ ~/.julia/packages/UMAP/owv5b/test/umap_tests.jl:123 [inlined]
[9] macro expansion
@ /opt/homebrew/Cellar/julia/1.8.2/share/julia/stdlib/v1.8/Test/src/Test.jl:1357 [inlined]
[10] top-level scope
@ ~/.julia/packages/UMAP/owv5b/test/umap_tests.jl:4
[11] include(fname::String)
@ Base.MainInclude ./client.jl:476
[12] top-level scope
@ ~/.julia/packages/UMAP/owv5b/test/runtests.jl:11
[13] include(fname::String)
@ Base.MainInclude ./client.jl:476
[14] top-level scope
@ none:6
[15] eval
@ ./boot.jl:368 [inlined]
[16] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:276
[17] _start()
@ Base ./client.jl:522
dyld[15164]: missing symbol called
signal (6): Abort trap: 6
in expression starting at /Users/cmarcotte/.julia/packages/UMAP/owv5b/test/umap_tests.jl:2
signal (6): Abort trap: 6
in expression starting at /Users/cmarcotte/.julia/packages/UMAP/owv5b/test/umap_tests.jl:2
__psynch_cvwait at /usr/lib/system/libsystem_kernel.dylib (unknown line)
unknown function (ip: 0x0)
__psynch_cvwait at /usr/lib/system/libsystem_kernel.dylib (unknown line)
unknown function (ip: 0x0)
__psynch_cvwait at /usr/lib/system/libsystem_kernel.dylib (unknown line)
unknown function (ip: 0x0)
__ulock_wait at /usr/lib/system/libsystem_kernel.dylib (unknown line)
unknown function (ip: 0x0)
Allocations: 81199534 (Pool: 81154034; Big: 45500); GC: 68
ERROR: Package UMAP errored during testing (exit code: 134)
I can tell that the actual issue is in Arpack, but the exit code I get from (test) pkg> test Arpack appears to have been dealt with in the version of Arpack_jll I have installed in the env (3.5.1+1) according to this closed issue. Does anyone have any insight into what the remaining problem might be?