Question about CSV.jl

Raymond · May 31, 2022, 2:57pm

What’s wrong with this problem?

julia> versioninfo()
Julia Version 1.7.3
Commit 742b9abb4d (2022-05-06 12:58 UTC)
Platform Info:
  OS: macOS (x86_64-apple-darwin21.4.0)
  CPU: Apple M1
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-12.0.1 (ORCJIT, westmere)
Environment:
  JULIA_NUM_THREADS = 8

julia> using CSV
[ Info: Precompiling CSV [336ed68f-0bac-5ca0-87d4-7b16caf5d00b]
ERROR: LoadError: UndefVarError: PosLen not defined
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/WeakRefStrings/31nkb/src/poslenstrings.jl:6
  [2] include(mod::Module, _path::String)
    @ Base ./Base.jl:418
  [3] include(x::String)
    @ WeakRefStrings ~/.julia/packages/WeakRefStrings/31nkb/src/WeakRefStrings.jl:1
  [4] top-level scope
    @ ~/.julia/packages/WeakRefStrings/31nkb/src/WeakRefStrings.jl:547
  [5] include
    @ ./Base.jl:418 [inlined]
  [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
    @ Base ./loading.jl:1318
  [7] top-level scope
    @ none:1
  [8] eval
    @ ./boot.jl:373 [inlined]
  [9] eval(x::Expr)
    @ Base.MainInclude ./client.jl:453
 [10] top-level scope
    @ none:1
in expression starting at /Users/zhangdeliang/.julia/packages/WeakRefStrings/31nkb/src/poslenstrings.jl:6
in expression starting at /Users/zhangdeliang/.julia/packages/WeakRefStrings/31nkb/src/WeakRefStrings.jl:1
ERROR: LoadError: Failed to precompile WeakRefStrings [ea10d353-3f73-51f8-a26c-33c1cb351aa5] to /Users/zhangdeliang/.julia/compiled/v1.7/WeakRefStrings/jl_Bd4T90.
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:33
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, ignore_loaded_modules::Bool)
    @ Base ./loading.jl:1466
  [3] compilecache(pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1410
  [4] _require(pkg::Base.PkgId)
    @ Base ./loading.jl:1120
  [5] require(uuidkey::Base.PkgId)
    @ Base ./loading.jl:1013
  [6] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:997
  [7] include
    @ ./Base.jl:418 [inlined]
  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
    @ Base ./loading.jl:1318
  [9] top-level scope
    @ none:1
 [10] eval
    @ ./boot.jl:373 [inlined]
 [11] eval(x::Expr)
    @ Base.MainInclude ./client.jl:453
 [12] top-level scope
    @ none:1
in expression starting at /Users/zhangdeliang/.julia/packages/CSV/jFiCn/src/CSV.jl:1
ERROR: Failed to precompile CSV [336ed68f-0bac-5ca0-87d4-7b16caf5d00b] to /Users/zhangdeliang/.julia/compiled/v1.7/CSV/jl_VlbYFQ.
Stacktrace:
 [1] error(s::String)
   @ Base ./error.jl:33
 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, ignore_loaded_modules::Bool)
   @ Base ./loading.jl:1466
 [3] compilecache(pkg::Base.PkgId, path::String)
   @ Base ./loading.jl:1410
 [4] _require(pkg::Base.PkgId)
   @ Base ./loading.jl:1120
 [5] require(uuidkey::Base.PkgId)
   @ Base ./loading.jl:1013
 [6] require(into::Module, mod::Symbol)
   @ Base ./loading.jl:997

bkamins · May 31, 2022, 3:00pm

what is the result of ] status?

Raymond · May 31, 2022, 3:00pm

(test) pkg> st
      Status `/Applications/julia/test/Project.toml`
  [336ed68f] CSV v0.10.4
  [a93c6f00] DataFrames v1.3.4
  [1313f7d8] DataFramesMeta v0.11.0
  [ce6b1742] RDatasets v0.7.7

Raymond · May 31, 2022, 3:04pm

I wonder if it is the problem of Mac M1.

Raymond · May 31, 2022, 3:12pm

Sorry. This problem has not been solved.

julia> using CSV
[ Info: Precompiling CSV [336ed68f-0bac-5ca0-87d4-7b16caf5d00b]
ERROR: LoadError: UndefVarError: PosLen not defined
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/WeakRefStrings/31nkb/src/poslenstrings.jl:6
  [2] include(mod::Module, _path::String)
    @ Base ./Base.jl:418
  [3] include(x::String)
    @ WeakRefStrings ~/.julia/packages/WeakRefStrings/31nkb/src/WeakRefStrings.jl:1
  [4] top-level scope
    @ ~/.julia/packages/WeakRefStrings/31nkb/src/WeakRefStrings.jl:547
  [5] include
    @ ./Base.jl:418 [inlined]
  [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
    @ Base ./loading.jl:1318
  [7] top-level scope
    @ none:1
  [8] eval
    @ ./boot.jl:373 [inlined]
  [9] eval(x::Expr)
    @ Base.MainInclude ./client.jl:453
 [10] top-level scope
    @ none:1
in expression starting at /Users/zhangdeliang/.julia/packages/WeakRefStrings/31nkb/src/poslenstrings.jl:6
in expression starting at /Users/zhangdeliang/.julia/packages/WeakRefStrings/31nkb/src/WeakRefStrings.jl:1
ERROR: LoadError: Failed to precompile WeakRefStrings [ea10d353-3f73-51f8-a26c-33c1cb351aa5] to /Users/zhangdeliang/.julia/compiled/v1.7/WeakRefStrings/jl_X9fq47.
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:33
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, ignore_loaded_modules::Bool)
    @ Base ./loading.jl:1466
  [3] compilecache(pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1410
  [4] _require(pkg::Base.PkgId)
    @ Base ./loading.jl:1120
  [5] require(uuidkey::Base.PkgId)
    @ Base ./loading.jl:1013
  [6] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:997
  [7] include
    @ ./Base.jl:418 [inlined]
  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
    @ Base ./loading.jl:1318
  [9] top-level scope
    @ none:1
 [10] eval
    @ ./boot.jl:373 [inlined]
 [11] eval(x::Expr)
    @ Base.MainInclude ./client.jl:453
 [12] top-level scope
    @ none:1
in expression starting at /Users/zhangdeliang/.julia/packages/CSV/jFiCn/src/CSV.jl:1
ERROR: Failed to precompile CSV [336ed68f-0bac-5ca0-87d4-7b16caf5d00b] to /Users/zhangdeliang/.julia/compiled/v1.7/CSV/jl_InlFfv.
Stacktrace:
 [1] error(s::String)
   @ Base ./error.jl:33
 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, ignore_loaded_modules::Bool)
   @ Base ./loading.jl:1466
 [3] compilecache(pkg::Base.PkgId, path::String)
   @ Base ./loading.jl:1410
 [4] _require(pkg::Base.PkgId)
   @ Base ./loading.jl:1120
 [5] require(uuidkey::Base.PkgId)
   @ Base ./loading.jl:1013
 [6] require(into::Module, mod::Symbol)
   @ Base ./loading.jl:997

Raymond · May 31, 2022, 3:25pm

I find that if I run in Terminal, it works well.

julia> cd("/Applications/julia/test/")

(test) pkg> activate .
  Activating project at `/Applications/julia/test`

julia> using CSV

julia> using DataFrames

But when I run in Atom REPL, it gets an error.

julia> cd("/Applications/julia/test/")

(@v1.7) pkg> activate .
  Activating project at `/Applications/julia/test`

julia> using CSV
[ Info: Precompiling CSV [336ed68f-0bac-5ca0-87d4-7b16caf5d00b]
ERROR: LoadError: UndefVarError: PosLen not defined
Stacktrace:

So maybe it is the problem of Atom.

Raymond · May 31, 2022, 3:47pm

In vscode, it also works well.

brenhinkeller · May 31, 2022, 3:59pm

Hmm, odd. Atom / Juno does somehow influence precompilation, but I’ve never quite understood how

bkamins · May 31, 2022, 6:02pm

@Raymond - do you use Atom? If yes - this is for sure Atom issue. Atom is not maintained and it is a known issue. Please switch to VS Code.

Raymond · May 31, 2022, 6:14pm

Yes, I switch to vscode.