Parts of DifferentialEquations Package are not compiling.
I can compile other packages, like Plots, etc. But not DE.
The error is:
[ Info: Precompiling DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa]
ERROR: LoadError: Failed to precompile BoundaryValueDiffEq [764a87c0-6b3e-53db-9096-fe964310641d] to /home/reula/.julia/compiled/v1.4/BoundaryValueDiffEq/Levrg_QfvW3.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1272
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::Module, ::String) at ./Base.jl:377
[7] top-level scope at none:2
[8] eval at ./boot.jl:331 [inlined]
[9] eval(::Expr) at ./client.jl:449
[10] top-level scope at ./none:3
in expression starting at /home/reula/.julia/packages/DifferentialEquations/xCZD1/src/DifferentialEquations.jl:12
ERROR: Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to /home/reula/.julia/compiled/v1.4/DifferentialEquations/UQdwS_QfvW3.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1272
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
Could you post ]st and ]st -m?
(@v1.4) pkg> st
Status `~/.julia/environments/v1.4/Project.toml`
[c52e3926] Atom v0.12.10
[0c46a032] DifferentialEquations v6.13.0
[7073ff75] IJulia v1.21.2
[e5e0dc1b] Juno v0.8.1
[15e1cf62] NPZ v0.4.0
[91a5bcdd] Plots v1.1.1
(@v1.4) pkg> st -m
Status `~/.julia/environments/v1.4/Manifest.toml`
[1520ce14] AbstractTrees v0.3.3
[79e6a3ab] Adapt v1.0.1
[ec485272] ArnoldiMethod v0.0.4
[4fba245c] ArrayInterface v2.8.5
[4c555306] ArrayLayouts v0.2.4
[bf4720bc] AssetRegistry v0.1.0
[c52e3926] Atom v0.12.10
[aae01518] BandedMatrices v0.15.4
[764a87c0] BoundaryValueDiffEq v2.3.0
[6e34b625] Bzip2_jll v1.0.6+2
[fa961155] CEnum v0.2.0
[00ebfdb7] CSTParser v2.2.1
[a603d957] CanonicalTraits v0.2.1
[7057c7e9] Cassette v0.3.3
[d360d2e6] ChainRulesCore v0.7.5
[53a63b46] CodeTools v0.7.0
[da1fd8a2] CodeTracking v0.5.9
[35d6a980] ColorSchemes v3.8.0
[3da002f7] ColorTypes v0.10.2
[5ae59095] Colors v0.12.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v3.8.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] Conda v1.4.1
[88cd18e8] ConsoleProgressMonitor v0.1.2
[187b0558] ConstructionBase v1.0.0
[d38c429a] Contour v0.5.2
[9a962f9c] DataAPI v1.2.0
[864edb3b] DataStructures v0.17.13
[bcd4f6db] DelayDiffEq v5.23.0
[2b5f629d] DiffEqBase v6.30.2
[459566f4] DiffEqCallbacks v2.13.0
[01453d9d] DiffEqDiffTools v1.7.0
[5a0ffddc] DiffEqFinancial v2.2.1
[c894b116] DiffEqJump v6.6.1
[77a26b50] DiffEqNoiseProcess v3.10.0
[055956cb] DiffEqPhysics v3.2.0
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[0c46a032] DifferentialEquations v6.13.0
[c619ae07] DimensionalPlotRecipes v1.2.0
[b4f34e82] Distances v0.8.2
[33d173f1] DocSeeker v0.4.1
[ffbed154] DocStringExtensions v0.8.1
[d4d017d3] ExponentialUtilities v1.6.0
[c87230d0] FFMPEG v0.3.0
[b22a6f82] FFMPEG_jll v4.1.0+2
[5789e2e9] FileIO v1.2.4
[1a297f60] FillArrays v0.8.7
[6a86dc24] FiniteDiff v2.3.0
[53c48c17] FixedPointNumbers v0.8.0
[08572546] FlameGraphs v0.2.2
[59287772] Formatting v0.4.1
[f6369f11] ForwardDiff v0.10.10
[d7e528f0] FreeType2_jll v2.10.1+2
[559328eb] FriBidi_jll v1.0.5+2
[069b7b12] FunctionWrappers v1.1.1
[de31a74c] FunctionalCollections v0.5.0
[28b8d3ca] GR v0.48.0
[6b9d7cbe] GeneralizedGenerated v0.2.3
[01680d73] GenericSVD v0.3.0
[4d00f742] GeometryTypes v0.8.2
[cd3eb016] HTTP v0.8.14
[9fb69e20] Hiccup v0.2.2
[7073ff75] IJulia v1.21.2
[9b13fd28] IndirectArrays v0.5.1
[d25df0c9] Inflate v0.1.2
[83e8ac13] IniFile v0.5.0
[42fd0dbc] IterativeSolvers v0.8.4
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[98e50ef6] JuliaFormatter v0.3.9
[aa1ae85d] JuliaInterpreter v0.7.13
[b14d175d] JuliaVariables v0.2.0
[e5e0dc1b] Juno v0.8.1
[c1c5ebd0] LAME_jll v3.100.0+0
[7c4cb9fa] LNR v0.2.1
[b964fa9f] LaTeXStrings v1.1.0
[2ee39098] LabelledArrays v1.1.0
[23fbe1c1] Latexify v0.13.0
[50d2b5c4] Lazy v0.15.0
[1d6d02ad] LeftChildRightSiblingTrees v0.1.2
[dd192d2f] LibVPX_jll v1.8.1+1
[093fc24a] LightGraphs v1.3.2
[d3d80556] LineSearches v7.0.1
[e6f89c97] LoggingExtras v0.4.0
[d00139f3] METIS_jll v5.1.0+3
[d8e11817] MLStyle v0.3.1
[1914dd2f] MacroTools v0.5.5
[739be429] MbedTLS v1.0.2
[c8ffd9c3] MbedTLS_jll v2.16.0+2
[442fdcdd] Measures v0.3.1
[e89f7d12] Media v0.5.0
[e1d29d7a] Missings v0.4.3
[961ee093] ModelingToolkit v3.1.1
[46d2c3a1] MuladdMacro v0.2.2
[f9640e96] MultiScaleArrays v1.8.0
[d41bc354] NLSolversBase v7.6.1
[2774e3e8] NLsolve v4.3.0
[15e1cf62] NPZ v0.4.0
[77ba4419] NaNMath v0.3.3
[71a1bf82] NameResolution v0.1.3
[510215fc] Observables v0.3.1
[e7412a2a] Ogg_jll v1.3.3+0
[4536629a] OpenBLAS_jll v0.3.9+2
[458c3c95] OpenSSL_jll v1.1.1+2
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[91d4177d] Opus_jll v1.3.1+0
[bac558e1] OrderedCollections v1.1.0
[1dea7af3] OrdinaryDiffEq v5.35.0
[65888b18] ParameterizedFunctions v5.3.0
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v1.0.2
[fa939f87] Pidfile v1.1.0
[ccf2f8ad] PlotThemes v2.0.0
[995b91a9] PlotUtils v1.0.0
[91a5bcdd] Plots v1.1.1
[e409e4f3] PoissonRandom v0.4.0
[8162dcfd] PrettyPrint v0.1.0
[33c8b6b6] ProgressLogging v0.1.2
[92933f4c] ProgressMeter v1.2.0
[e6cf234a] RandomNumbers v1.4.0
[3cdcf5f2] RecipesBase v1.0.1
[01d81517] RecipesPipeline v0.1.6
[731186ca] RecursiveArrayTools v2.3.1
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[ae5879a3] ResettableStacks v1.0.0
[f2b01f46] Roots v1.0.1
[1bc83da4] SafeTestsets v0.0.1
[992d4aef] Showoff v0.3.1
[699a6c99] SimpleTraits v0.9.2
[b85f4697] SoftGlobalScope v1.0.10
[a2af1166] SortingAlgorithms v0.3.1
[47a9eef4] SparseDiffTools v1.6.0
[276daf66] SpecialFunctions v0.10.0
[90137ffa] StaticArrays v0.12.2
[2913bbd2] StatsBase v0.33.0
[9672c7b4] SteadyStateDiffEq v1.5.0
[789caeaf] StochasticDiffEq v6.19.2
[88034a9c] StringDistances v0.6.4
[bea87d4a] SuiteSparse_jll v5.4.0+8
[c3572dad] Sundials v4.2.0
[fb77eaff] Sundials_jll v5.2.0+0
[3783bdb8] TableTraits v1.0.0
[5d786b92] TerminalLoggers v0.1.1
[0796e94c] Tokenize v0.5.8
[37b6cedf] Traceur v0.3.0
[a2a6695c] TreeViews v0.3.0
[30578b45] URIParser v0.4.1
[3a884ed6] UnPack v0.1.0
[1986cc42] Unitful v1.1.0
[81def892] VersionParsing v1.2.0
[19fa3120] VertexSafeGraphs v0.1.1
[0f1e0344] WebIO v0.8.11
[104b5d7c] WebSockets v1.5.2
[cc8bc4a8] Widgets v0.6.2
[c2297ded] ZMQ v1.2.0
[8f1865be] ZeroMQ_jll v4.3.2+2
[a5390f91] ZipFile v0.9.1
[83775a58] Zlib_jll v1.2.11+9
[700de1a5] ZygoteRules v0.2.0
[0ac62f75] libass_jll v0.14.0+1
[f638f0a6] libfdk_aac_jll v0.1.6+1
[f27f6e37] libvorbis_jll v1.3.6+2
[1270edf5] x264_jll v2019.5.25+1
[dfaa095f] x265_jll v3.0.0+0
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[7b1f6079] FileWatching
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[9abbd945] Profile
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Solved I think it was a memory problem in my virtual machine.
Enlarged the ram and leave only the console and compiled.
kernel.log was saying it was killing the compilation on previous attempts.
Strange!
2 Likes
I have the same problem. How can I solve it, please?