MultivariateStats (PCA)

raman_kumar · June 14, 2022, 9:21am

and

Please help me in error. I am using Manjaro Linux.

nilshg · June 14, 2022, 9:33am

See: Arpack_jll artifacts unable to see OpenBLAS_jll artifacts for linking · Issue #97 · JuliaLinearAlgebra/Arpack.jl · GitHub

kevbonham · June 14, 2022, 11:10am

Also, please see this post with some tips on how to make it easier to help you. In particular, pasting in properly formatted code rather than screenshots is preferred.

nilshg · June 14, 2022, 12:21pm

Agreed, although OP has been pointed to this many times before (including on the last topic he opened, just a week ago, and over a year go initially) so I’ve given up on re-posting the link at this point…

raman_kumar · June 14, 2022, 12:34pm

(@v1.7) pkg> st --manifest Arpack
      Status `~/.julia/environments/v1.7/Manifest.toml`
  [7d9fca2a] Arpack v0.5.3

julia> versioninfo()
Julia Version 1.7.3
Commit 742b9abb4d* (2022-05-06 12:58 UTC)
Platform Info:
  OS: Linux (x86_64-pc-linux-gnu)
  CPU: Intel(R) Core(TM) i7-2600 CPU @ 3.40GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-13.0.1 (ORCJIT, sandybridge)

julia> using LinearAlgebra; BLAS.vendor()
┌ Warning: `vendor()` is deprecated, use `BLAS.get_config()` and inspect the output instead
│   caller = top-level scope at REPL[4]:1
└ @ Core REPL[4]:1
:openblas

(@v1.7) pkg> st --manifest Arpack_jll
      Status `~/.julia/environments/v1.7/Manifest.toml`
  [68821587] Arpack_jll v3.5.1+1

(@v1.7) pkg> st --manifest OpenBLAS_jll
      Status `~/.julia/environments/v1.7/Manifest.toml`
  [4536629a] OpenBLAS_jll

julia> using Libdl

julia> filter!(p -> occursin("blas", p), Libdl.dllist())
2-element Vector{String}:
 "/usr/bin/../lib/julia/libblas.so"
 "/usr/bin/../lib/julia/libblastrampoline.so

I have installed Julia in My Manjaro Linux by typing “snap install Julia” in CLI terminal.

raman_kumar · June 14, 2022, 1:48pm

raman_kumar · June 14, 2022, 4:23pm

      From worker 2:	Stacktrace:
      From worker 2:	 [1] include(x::String)
      From worker 2:	   @ MultivariateStats ~/.julia/packages/MultivariateStats/zLpz8/src/MultivariateStats.jl:1
      From worker 2:	 [2] top-level scope
      From worker 2:	   @ ~/.julia/packages/MultivariateStats/zLpz8/src/MultivariateStats.jl:113
      From worker 2:	 [3] top-level scope (repeats 2 times)
      From worker 2:	   @ none:1
      From worker 2:	in expression starting at /home/raman/.julia/packages/MultivariateStats/zLpz8/src/kpca.jl:3
      From worker 2:	in expression starting at /home/raman/.julia/packages/MultivariateStats/zLpz8/src/MultivariateStats.jl:1
      From worker 2:	ERROR: LoadError: InitError: could not load library "/home/raman/.julia/artifacts/cdf6dc8aa6771a61c6c65a5a5c1a8d1b75f50a2f/lib/libarpack.so"
      From worker 2:	libopenblas64_.so: cannot open shared object file: No such file or directory
      From worker 2:	Stacktrace:
      From worker 2:	 [1] macro expansion
      From worker 2:	   @ ~/.julia/packages/JLLWrappers/QpMQW/src/products/library_generators.jl:54 [inlined]
      From worker 2:	 [2] __init__()
      From worker 2:	   @ Arpack_jll ~/.julia/packages/Arpack_jll/zfgpQ/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:10
      From worker 2:	 [3] top-level scope (repeats 2 times)
      From worker 2:	   @ none:1
      From worker 2:	during initialization of module Arpack_jll
      From worker 2:	in expression starting at /home/raman/.julia/packages/Arpack/pLziT/src/Arpack.jl:2
      From worker 2:	ERROR: LoadError: Failed to precompile Arpack [7d9fca2a-8960-54d3-9f78-7d1dccf2cb97] to /home/raman/.julia/compiled/v1.7/Arpack/jl_paZnaY.
      From worker 2:	Stacktrace:
      From worker 2:	 [1] include(x::String)
      From worker 2:	   @ MultivariateStats ~/.julia/packages/MultivariateStats/zLpz8/src/MultivariateStats.jl:1
      From worker 2:	 [2] top-level scope
      From worker 2:	   @ ~/.julia/packages/MultivariateStats/zLpz8/src/MultivariateStats.jl:113
      From worker 2:	 [3] top-level scope (repeats 2 times)
      From worker 2:	   @ none:1
      From worker 2:	in expression starting at /home/raman/.julia/packages/MultivariateStats/zLpz8/src/kpca.jl:3
      From worker 2:	in expression starting at /home/raman/.julia/packages/MultivariateStats/zLpz8/src/MultivariateStats.jl:1

Output in my Terminal while running code in Pluto.

nilshg · June 14, 2022, 5:33pm

Don’t do this, follow the Linux installation instructions instead:

ParadaCarleton · June 14, 2022, 7:51pm

If you’re on Manjaro, the best thing to do is install from the AUR. Go into Pacman, search for julia-bin, then install that. Make sure you have AUR support enabled. The version on Snap is broken.

raman_kumar · June 15, 2022, 1:00am

    ~  cd /home/raman/julia-1.7.3/bin/                                1 ✘ 
    ~/julia-1.7.3/bin  julia                                            ✔ 
The application julia is not installed. It may be found in the following packages:
  community/julia 2:1.7.2-2	/usr/bin/julia
Do you want to Install package julia? (y/N)

How to install from binary ?

    /bin  cd                                                127 ✘  34s  
    ~  cd /home/raman/julia-1.7.3-linux-x86_64/julia-1.7.3/bin          ✔ 
    ~/julia-1.7.3-/j/bin  julia                                         ✔ 
The application julia is not installed. It may be found in the following packages:
  community/julia 2:1.7.2-2	/usr/bin/julia
Do you want to Install package julia? (y/N)  N 
    ~/julia-1.7.3-/j/bin  cd /home/raman/julia-1.7.3-linux-x86_64/julia-1.7.3/bin/
    ~/julia-1.7.3-/j/bin  julia                                         ✔ 
The application julia is not installed. It may be found in the following packages:
  community/julia 2:1.7.2-2	/usr/bin/julia
Do you want to Install package julia? (y/N)  M 
    ~/julia-1.7.3-/j/bin  cd /home/raman/julia-1.7.3-linux-x86_64/julia-1.7.3/bin/julia/
cd: not a directory: /home/raman/julia-1.7.3-linux-x86_64/julia-1.7.3/bin/julia/
    ~/julia-1.7.3-/j/bin  cd /home/raman/julia-1.7.3-linux-x86_64/julia-1.7.3/bin/julia 
cd: not a directory: /home/raman/julia-1.7.3-linux-x86_64/julia-1.7.3/bin/julia
    ~/julia-1.7.3-/j/bin  
    ~  cd /home/raman/julia-1.7.3                                       ✔ 
    ~/julia-1.7.3  cd /home/raman/julia-1.7.3/bin/julia                 ✔ 
cd: not a directory: /home/raman/julia-1.7.3/bin/julia
    ~/julia-1.7.3  cd /home/raman/julia-1.7.3/bin/                    1 ✘ 
    ~/julia-1.7.3/bin  julia                                            ✔ 
The application julia is not installed. It may be found in the following packages:
  community/julia 2:1.7.2-2	/usr/bin/julia
Do you want to Install package julia? (y/N)  m

raman_kumar · June 15, 2022, 7:05am

I found this video on youtube helpful. Now i am able to open Julia by typing julia in CLI.

    ~  julia                                                            ✔ 
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.7.3 (2022-05-06)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

julia> using Pluto
[ Info: Precompiling Pluto [c3e4b0f8-55cb-11ea-2926-15256bba5781]
┌ Info: 
│ 
│     Welcome to Pluto v0.19.8 🎈
│     Start a notebook server using:
│ 
│   julia> Pluto.run()
│ 
│     Have a look at the FAQ:
│     https://github.com/fonsp/Pluto.jl/wiki
└ 

julia> Pluto.run()
[ Info: Loading...
┌ Info: 
└ Opening http://localhost:1234/?secret=ezrIUdQ1 in your default browser... ~ have fun!
┌ Info: 
│ Press Ctrl+C in this terminal to stop Pluto