Interest in single molecule localization microscopy?

Specific Domains
1

I’ve implemented a few algorithms for single molecule localization microscopy: a (quite) fast localizer for high density 2D SMLM and a drift correction algorithm for 2D and 3D localizations.

My question is whether there is enough interest in the Julia community for me to make these into packages; I’d also love to collaborate if anyone is working on similar stuff.

3 Likes
2

We’re not working on this, but it would be great to have. Obviously hosting them in your own account is a fine idea. If you prefer an organization, let me know if you want JuliaImages or something else. (JuliaMicroscopy? Doesn’t exist yet, but it could…)

6 Likes
3

Sure, I’ll host the packages in my account and keep them unregistered unless there’s more interest.

2D localization is here: SingleMoleculeLocalization.jl
and my (as yet undocumented) package for drift correction is here: Drifter.jl.

5 Likes
4

Although I don’t do much with microscopy, I appreciate all contributions of this kind.

These types of issues pop up in other fields too, so having code like this available to play with is great.

1 Like