Error when running `using Plots; pythonplot();` in old environment

I was loading an old Julia environment (maybe half a year old? It is 1.10.4). I then run

julia> using Plots
julia> pythonplot()

And get a
ERROR: InitError: PythonCall.PyException(PythonCall.Py(Ptr{PythonCall.C.PyObject} @0x00007420cfecb0c0), PythonCall.Py(Ptr{PythonCall.C.PyObject} @0x0000742105fe77c0), PythonCall.Py(Ptr{PythonCall.C.PyObject} @0x00007421060f4500), false)
Stacktrace:
[1] pythrow()
@ PythonCall ~/.julia/packages/PythonCall/qTEA1/src/err.jl:94
[2] errcheck
@ ~/.julia/packages/PythonCall/qTEA1/src/err.jl:10 [inlined]
[3] pycontains
@ ~/.julia/packages/PythonCall/qTEA1/src/abstract/object.jl:298
[4] haskey
@ ~/.julia/packages/PythonCall/qTEA1/src/pywrap/PyDict.jl:76 [inlined]
[5] get
@ ~/.julia/packages/PythonCall/qTEA1/src/pywrap/PyDict.jl:81 [inlined]
[6] getnone(dict::PythonCall.PyDict{Any, Any}, key::String, default::String)
@ PythonPlot ~/.julia/packages/PythonPlot/KcWMF/src/init.jl:38
[7] find_backend(matplotlib::PythonCall.Py)
@ PythonPlot ~/.julia/packages/PythonPlot/KcWMF/src/init.jl:66
[8] init()
@ PythonPlot ~/.julia/packages/PythonPlot/KcWMF/src/init.jl:157
[9] run_module_init(mod::Module, i::Int64)
@ Base ./loading.jl:1134
[10] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
@ Base ./loading.jl:1122
[11] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String, depmods::Vector{Any})
@ Base ./loading.jl:1067
[12] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128)
@ Base ./loading.jl:1581
[13] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:1938
[14] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:1812
[15] #invoke_in_world#3
@ ./essentials.jl:926 [inlined]
[16] invoke_in_world
@ ./essentials.jl:923 [inlined]
[17] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:1803
[18] macro expansion
@ ./loading.jl:1790 [inlined]
[19] macro expansion
@ ./lock.jl:267 [inlined]
[20] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:1753
[21] #invoke_in_world#3
@ ./essentials.jl:926 [inlined]
[22] invoke_in_world
@ ./essentials.jl:923 [inlined]
[23] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1746
[24] top-level scope
@ ~/.julia/packages/Plots/sxUvK/src/backends.jl:1084
during initialization of module PythonPlot


Any idea how to fix this? I initialised the old environment, and use the same Julia version, so figured this should all be fine? But maybe it is because python is involved that the old environment is not entirely recreated, and that messes things up?

Hi! Can you share the output of pkg> st and pkg> st -m?

1 Like
(Scripts) pkg> st
Status `~/Desktop/Writings/General Model Article/Scripts/Project.toml`
⌃ [0f109fa4] BifurcationKit v0.3.1
⌃ [336ed68f] CSV v0.10.11
⌃ [479239e8] Catalyst v13.5.0
⌃ [717857b8] DSP v0.7.9
⌅ [459566f4] DiffEqCallbacks v2.35.0
⌃ [0c46a032] DifferentialEquations v7.11.0
⌃ [7a1cc6ca] FFTW v1.7.1
⌃ [ccbc3e58] JumpProcesses v9.10.1
⌃ [5ab0869b] KernelDensity v0.6.8
  [fc60dff9] LombScargle v1.0.3
  [2fda8390] LsqFit v0.15.0
⌃ [23992714] MAT v0.10.6
⌃ [18e31ff7] Peaks v0.4.4
⌃ [91a5bcdd] Plots v1.39.0
⌃ [f27b6e38] Polynomials v4.0.4
⌃ [08abe8d2] PrettyTables v2.2.8
⌃ [274fc56d] PythonPlot v1.0.3
⌃ [2913bbd2] StatsBase v0.34.2
⌃ [f3b207a7] StatsPlots v0.15.6
⌃ [29a0d76e] StochasticDelayDiffEq v1.5.0
⌃ [789caeaf] StochasticDiffEq v6.63.2
Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated`

(Scripts) pkg> st -m
Status `~/Desktop/Writings/General Model Article/Scripts/Manifest.toml`
⌅ [47edcb42] ADTypes v0.2.4
⌅ [c3fe647b] AbstractAlgebra v0.32.5
  [621f4979] AbstractFFTs v1.5.0
⌃ [1520ce14] AbstractTrees v0.4.4
⌅ [79e6a3ab] Adapt v3.7.0
⌅ [ec485272] ArnoldiMethod v0.2.0
⌅ [7d9fca2a] Arpack v0.5.3
⌃ [4fba245c] ArrayInterface v7.4.11
  [30b0a656] ArrayInterfaceCore v0.1.29
⌃ [4c555306] ArrayLayouts v1.4.2
⌃ [13072b0f] AxisAlgorithms v1.0.1
⌃ [aae01518] BandedMatrices v1.1.0
⌃ [0f109fa4] BifurcationKit v0.3.1
⌃ [e2ed5e7c] Bijections v0.1.6
⌃ [d1d4a3ce] BitFlags v0.1.7
⌃ [62783981] BitTwiddlingConvenienceFunctions v0.1.5
⌅ [8e7c35d0] BlockArrays v0.16.38
⌃ [764a87c0] BoundaryValueDiffEq v5.2.0
⌃ [e1450e63] BufferedStreams v1.2.1
⌅ [fa961155] CEnum v0.4.2
⌃ [2a0fbf3d] CPUSummary v0.2.4
⌃ [00ebfdb7] CSTParser v3.3.6
⌃ [336ed68f] CSV v0.10.11
⌃ [49dc2e85] Calculus v0.5.1
⌃ [479239e8] Catalyst v13.5.0
⌃ [d360d2e6] ChainRulesCore v1.18.0
⌃ [fb6a15b2] CloseOpenIntervals v0.1.12
⌃ [aaaa29a8] Clustering v0.15.5
⌃ [944b1d66] CodecZlib v0.7.3
⌃ [35d6a980] ColorSchemes v3.24.0
⌅ [3da002f7] ColorTypes v0.11.4
⌅ [c3611d14] ColorVectorSpace v0.10.0
⌅ [5ae59095] Colors v0.12.10
  [861a8166] Combinatorics v1.0.2
⌃ [a80b9123] CommonMark v0.8.12
  [38540f10] CommonSolve v0.2.4
⌃ [bbf7d656] CommonSubexpressions v0.3.0
⌃ [34da2185] Compat v4.10.0
⌃ [b152e2b5] CompositeTypes v0.1.3
  [2569d6c7] ConcreteStructs v0.2.3
⌃ [f0e56b4a] ConcurrentUtilities v2.2.1
⌃ [992eb4ea] CondaPkg v0.2.22
⌅ [187b0558] ConstructionBase v1.5.4
⌃ [d38c429a] Contour v0.6.2
  [adafc99b] CpuId v0.3.1
  [a8cc5b0e] Crayons v4.1.1
⌃ [717857b8] DSP v0.7.9
⌃ [9a962f9c] DataAPI v1.15.0
⌃ [864edb3b] DataStructures v0.18.15
  [e2d170a0] DataValueInterfaces v1.0.0
⌃ [bcd4f6db] DelayDiffEq v5.43.1
  [8bb1440f] DelimitedFiles v1.9.1
⌃ [2b5f629d] DiffEqBase v6.133.1
⌅ [459566f4] DiffEqCallbacks v2.35.0
⌃ [77a26b50] DiffEqNoiseProcess v5.19.0
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
⌃ [0c46a032] DifferentialEquations v7.11.0
⌃ [b4f34e82] Distances v0.10.10
⌃ [31c24e10] Distributions v0.25.102
  [ffbed154] DocStringExtensions v0.9.3
⌅ [5b8099bc] DomainSets v0.6.7
⌃ [fa6b7ba4] DualNumbers v0.6.8
⌅ [7c1d4256] DynamicPolynomials v0.5.3
  [4e289a0a] EnumX v1.0.4
⌅ [f151be2c] EnzymeCore v0.6.2
⌃ [460bff9d] ExceptionUnwrapping v0.1.9
⌃ [d4d017d3] ExponentialUtilities v1.25.0
  [e2ba6199] ExprTools v0.1.10
⌃ [c87230d0] FFMPEG v0.4.1
⌃ [7a1cc6ca] FFTW v1.7.1
⌅ [7034ab61] FastBroadcast v0.2.7
  [9aa1b823] FastClosures v0.3.2
⌅ [442a2c76] FastGaussQuadrature v0.5.1
⌃ [29a986be] FastLapackInterface v2.0.0
⌃ [48062228] FilePathsBase v0.9.21
⌃ [1a297f60] FillArrays v1.7.0
⌃ [6a86dc24] FiniteDiff v2.21.1
⌃ [53c48c17] FixedPointNumbers v0.8.4
⌃ [59287772] Formatting v0.4.2
⌃ [f6369f11] ForwardDiff v0.10.36
  [069b7b12] FunctionWrappers v1.1.3
  [77dc65aa] FunctionWrappersWrappers v0.1.3
⌅ [d9f16b24] Functors v0.4.5
⌅ [46192b85] GPUArraysCore v0.1.5
⌅ [28b8d3ca] GR v0.72.10
⌃ [c145ed77] GenericSchur v0.5.3
  [c27321d9] Glob v1.3.1
⌃ [86223c79] Graphs v1.9.0
  [42e2da0e] Grisu v1.0.2
⌅ [0b43b601] Groebner v0.4.4
⌅ [d5909c97] GroupsCore v0.4.0
⌃ [f67ccb44] HDF5 v0.17.1
⌃ [cd3eb016] HTTP v1.10.0
⌃ [3e5b6fbb] HostCPUFeatures v0.1.16
⌃ [34004b35] HypergeometricFunctions v0.3.23
  [615f187c] IfElse v0.1.1
⌃ [d25df0c9] Inflate v0.1.4
⌃ [842dd82b] InlineStrings v1.4.0
  [18e54dd8] IntegerMathUtils v0.1.2
⌅ [a98d9a8b] Interpolations v0.14.7
⌃ [8197267c] IntervalSets v0.7.8
  [92d709cd] IrrationalConstants v0.2.2
⌃ [c8e1da08] IterTools v1.8.0
⌃ [42fd0dbc] IterativeSolvers v0.9.2
  [82899510] IteratorInterfaceExtensions v1.0.0
⌃ [1019f520] JLFzf v0.1.6
⌃ [692b3bcd] JLLWrappers v1.5.0
  [682c06a0] JSON v0.21.4
⌃ [0f8b85d8] JSON3 v1.13.2
⌃ [98e50ef6] JuliaFormatter v1.0.40
⌃ [ccbc3e58] JumpProcesses v9.10.1
⌅ [ef3ab10e] KLU v0.4.1
⌃ [5ab0869b] KernelDensity v0.6.8
⌃ [ba0b0d4f] Krylov v0.9.4
⌅ [0b1a1467] KrylovKit v0.6.0
⌃ [b964fa9f] LaTeXStrings v1.3.0
⌃ [2ee39098] LabelledArrays v1.14.0
⌅ [984bce1d] LambertW v0.4.6
⌃ [23fbe1c1] Latexify v0.16.1
⌃ [10f19ff3] LayoutPointers v0.1.14
  [50d2b5c4] Lazy v0.15.1
  [2d8b4e74] LevyArea v1.0.0
⌃ [d3d80556] LineSearches v7.2.0
⌃ [7a12625a] LinearMaps v3.11.1
⌃ [7ed4a6bd] LinearSolve v2.11.1
⌃ [2ab3a3ac] LogExpFunctions v0.3.26
⌃ [e6f89c97] LoggingExtras v1.0.3
  [fc60dff9] LombScargle v1.0.3
⌃ [bdcacae8] LoopVectorization v0.12.165
  [2fda8390] LsqFit v0.15.0
⌃ [23992714] MAT v0.10.6
  [d8e11817] MLStyle v0.4.17
⌃ [3da0fdf6] MPIPreferences v0.1.9
⌃ [1914dd2f] MacroTools v0.5.11
  [d125e4d3] ManualMemory v0.1.8
⌃ [739be429] MbedTLS v1.1.7
  [eff96d63] Measurements v2.11.0
  [442fdcdd] Measures v0.3.2
  [0b3b1443] MicroMamba v0.1.14
⌃ [e1d29d7a] Missings v1.1.0
⌅ [961ee093] ModelingToolkit v8.72.2
  [46d2c3a1] MuladdMacro v0.2.4
⌃ [102ac46a] MultivariatePolynomials v0.5.2
⌃ [6f286f6a] MultivariateStats v0.10.2
⌃ [d8a4904e] MutableArithmetics v1.3.3
  [d41bc354] NLSolversBase v7.8.3
  [2774e3e8] NLsolve v4.5.1
  [77ba4419] NaNMath v1.0.2
⌃ [b8a86587] NearestNeighbors v0.4.13
⌅ [8913a72c] NonlinearSolve v2.4.0
⌃ [510215fc] Observables v0.5.4
⌃ [6fe1bfb0] OffsetArrays v1.12.10
⌃ [4d8831e6] OpenSSL v1.4.1
⌃ [429524aa] Optim v1.7.8
⌃ [bac558e1] OrderedCollections v1.6.2
⌃ [1dea7af3] OrdinaryDiffEq v6.58.0
⌃ [90014a1f] PDMats v0.11.28
  [65ce6f38] PackageExtensionCompat v1.0.2
  [d96e819e] Parameters v0.12.3
⌃ [69de0a69] Parsers v2.7.2
⌃ [18e31ff7] Peaks v0.4.4
  [fa939f87] Pidfile v1.3.0
  [b98c9c47] Pipe v1.3.0
⌃ [ccf2f8ad] PlotThemes v3.1.0
⌃ [995b91a9] PlotUtils v1.3.5
⌃ [91a5bcdd] Plots v1.39.0
  [e409e4f3] PoissonRandom v0.4.4
⌃ [f517fe37] Polyester v0.7.8
⌃ [1d0040c9] PolyesterWeave v0.2.1
⌃ [f27b6e38] Polynomials v4.0.4
  [2dfb63ee] PooledArrays v1.4.3
  [85a6dd25] PositiveFactorizations v0.2.4
⌃ [d236fae5] PreallocationTools v0.4.12
⌃ [aea7be01] PrecompileTools v1.2.0
⌃ [21216c6a] Preferences v1.4.1
⌃ [08abe8d2] PrettyTables v2.2.8
⌃ [27ebfcd6] Primes v0.5.4
⌃ [6099a3de] PythonCall v0.9.14
⌃ [274fc56d] PythonPlot v1.0.3
⌃ [1fd47b50] QuadGK v2.9.1
⌃ [74087812] Random123 v1.6.1
  [fb686558] RandomExtensions v0.4.4
⌃ [e6cf234a] RandomNumbers v1.5.3
  [c84ed2f1] Ratios v0.4.5
  [3cdcf5f2] RecipesBase v1.3.4
  [01d81517] RecipesPipeline v0.6.12
⌅ [731186ca] RecursiveArrayTools v2.38.10
⌃ [f2c3362d] RecursiveFactorization v0.2.20
  [189a3867] Reexport v1.2.2
  [05181044] RelocatableFolders v1.0.1
  [ae029012] Requires v1.3.0
  [ae5879a3] ResettableStacks v1.1.1
⌅ [79098fc4] Rmath v0.7.1
⌃ [7e49a35a] RuntimeGeneratedFunctions v0.5.12
⌃ [fdea26ae] SIMD v3.4.5
  [94e857df] SIMDTypes v0.1.0
⌃ [476501e8] SLEEFPirates v0.6.39
⌃ [0bca4576] SciMLBase v2.4.3
  [e9a6253c] SciMLNLSolve v0.1.9
⌃ [c0aeaf25] SciMLOperators v0.3.6
⌃ [6c6a2e73] Scratch v1.2.0
⌃ [91c51154] SentinelArrays v1.4.0
  [efcf1570] Setfield v1.1.1
  [992d4aef] Showoff v1.0.3
⌃ [777ac1f9] SimpleBufferStream v1.1.0
⌅ [727e6d20] SimpleNonlinearSolve v0.1.23
  [699a6c99] SimpleTraits v0.9.4
  [ce78b400] SimpleUnPack v1.1.0
  [66db9d55] SnoopPrecompile v1.0.3
⌃ [a2af1166] SortingAlgorithms v1.2.0
⌃ [47a9eef4] SparseDiffTools v2.8.0
  [e56a9233] Sparspak v0.3.9
⌃ [276daf66] SpecialFunctions v2.3.1
⌅ [aedffcd0] Static v0.8.8
⌃ [0d7ed370] StaticArrayInterface v1.4.1
⌃ [90137ffa] StaticArrays v1.6.5
⌃ [1e83bf80] StaticArraysCore v1.4.2
  [82ae8749] StatsAPI v1.7.0
⌃ [2913bbd2] StatsBase v0.34.2
⌃ [4c63d2b9] StatsFuns v1.3.0
⌃ [f3b207a7] StatsPlots v0.15.6
⌅ [9672c7b4] SteadyStateDiffEq v1.16.1
⌃ [29a0d76e] StochasticDelayDiffEq v1.5.0
⌃ [789caeaf] StochasticDiffEq v6.63.2
⌅ [7792a7ef] StrideArraysCore v0.4.17
⌅ [892a3eda] StringManipulation v0.3.4
⌃ [09ab397b] StructArrays v0.6.16
⌃ [856f2bd8] StructTypes v1.10.0
⌃ [c3572dad] Sundials v4.20.0
⌅ [2efcf032] SymbolicIndexingInterface v0.2.2
⌅ [d1185830] SymbolicUtils v1.4.0
⌅ [0c5d862f] Symbolics v5.10.0
  [ab02a1b2] TableOperations v1.2.0
  [3783bdb8] TableTraits v1.0.1
⌃ [bd369af6] Tables v1.11.1
  [62fd8b95] TensorCore v0.1.1
  [8290d209] ThreadingUtilities v0.5.2
⌃ [a759f4b9] TimerOutputs v0.5.23
⌃ [0796e94c] Tokenize v0.5.25
⌅ [3bb67fe8] TranscodingStreams v0.10.1
  [a2a6695c] TreeViews v0.3.0
⌅ [d5829a12] TriangularSolve v0.1.19
⌃ [410a4b4d] Tricks v0.1.8
  [781d530d] TruncatedStacktraces v1.4.0
  [5c2747f8] URIs v1.5.1
  [3a884ed6] UnPack v1.0.2
  [1cfade01] UnicodeFun v0.4.1
⌃ [1986cc42] Unitful v1.17.0
⌃ [45397f5d] UnitfulLatexify v1.6.3
⌃ [a7c27f48] Unityper v0.1.5
  [e17b2a0c] UnsafePointers v1.0.0
  [41fe7b60] Unzip v0.2.0
⌃ [3d5dd08c] VectorizationBase v0.21.64
  [81def892] VersionParsing v1.3.0
  [19fa3120] VertexSafeGraphs v0.2.0
  [ea10d353] WeakRefStrings v1.4.2
  [cc8bc4a8] Widgets v0.6.6
⌅ [efce3f68] WoodburyMatrices v0.5.5
  [76eceee3] WorkerUtilities v1.6.1
⌃ [700de1a5] ZygoteRules v0.2.3
⌅ [68821587] Arpack_jll v3.5.1+1
⌃ [6e34b625] Bzip2_jll v1.0.8+0
⌃ [83423d85] Cairo_jll v1.16.1+1
  [2702e6a9] EpollShim_jll v0.0.20230411+0
⌃ [2e619515] Expat_jll v2.5.0+0
⌅ [b22a6f82] FFMPEG_jll v4.4.2+2
⌃ [f5851436] FFTW_jll v3.3.10+0
⌃ [a3f928ae] Fontconfig_jll v2.13.93+0
⌃ [d7e528f0] FreeType2_jll v2.13.1+0
⌃ [559328eb] FriBidi_jll v1.0.10+0
⌃ [0656b61e] GLFW_jll v3.3.8+0
⌅ [d2c73de3] GR_jll v0.72.10+0
  [78b55507] Gettext_jll v0.21.0+0
⌃ [7746bdde] Glib_jll v2.76.5+0
  [3b182d85] Graphite2_jll v1.3.14+0
⌃ [0234f1f7] HDF5_jll v1.12.2+2
⌅ [2e76f6c2] HarfBuzz_jll v2.8.1+1
⌅ [1d5cc7b8] IntelOpenMP_jll v2023.2.0+0
⌃ [aacddb02] JpegTurbo_jll v2.1.91+0
⌃ [c1c5ebd0] LAME_jll v3.100.1+0
⌅ [88015f11] LERC_jll v3.0.0+1
⌃ [1d63c593] LLVMOpenMP_jll v15.0.4+0
⌃ [dd4b983a] LZO_jll v2.10.1+0
⌅ [e9f186c6] Libffi_jll v3.2.2+1
⌃ [d4300ac3] Libgcrypt_jll v1.8.7+0
  [7e76a0d4] Libglvnd_jll v1.6.0+0
⌃ [7add5ba3] Libgpg_error_jll v1.42.0+0
⌃ [94ce4f54] Libiconv_jll v1.17.0+0
⌃ [4b2f31a3] Libmount_jll v2.35.0+0
⌅ [89763e89] Libtiff_jll v4.5.1+1
⌃ [38a345b3] Libuuid_jll v2.36.0+0
⌅ [856f044c] MKL_jll v2023.2.0+0
  [e7412a2a] Ogg_jll v1.3.5+1
⌅ [458c3c95] OpenSSL_jll v1.1.23+0
  [efe28fd5] OpenSpecFun_jll v0.5.5+0
⌃ [91d4177d] Opus_jll v1.3.2+0
⌃ [30392449] Pixman_jll v0.42.2+0
⌅ [c0090381] Qt6Base_jll v6.5.2+2
⌅ [f50d1b31] Rmath_jll v0.4.0+0
⌅ [fb77eaff] Sundials_jll v5.2.2+0
  [a44049a8] Vulkan_Loader_jll v1.3.243+0
  [a2964d1f] Wayland_jll v1.21.0+1
⌃ [2381bf8a] Wayland_protocols_jll v1.25.0+0
⌃ [02c8fc9c] XML2_jll v2.11.5+0
⌃ [aed1982a] XSLT_jll v1.1.34+0
⌃ [ffd25f8a] XZ_jll v5.4.4+0
⌃ [f67eecfb] Xorg_libICE_jll v1.0.10+1
⌃ [c834827a] Xorg_libSM_jll v1.2.3+0
  [4f6342f7] Xorg_libX11_jll v1.8.6+0
  [0c0b7dd1] Xorg_libXau_jll v1.0.11+0
  [935fb764] Xorg_libXcursor_jll v1.2.0+4
  [a3789734] Xorg_libXdmcp_jll v1.1.4+0
⌃ [1082639a] Xorg_libXext_jll v1.3.4+4
  [d091e8ba] Xorg_libXfixes_jll v5.0.3+4
  [a51aa0fd] Xorg_libXi_jll v1.7.10+4
  [d1454406] Xorg_libXinerama_jll v1.1.4+4
  [ec84b674] Xorg_libXrandr_jll v1.5.2+4
⌃ [ea2f1a96] Xorg_libXrender_jll v0.9.10+4
  [14d82f49] Xorg_libpthread_stubs_jll v0.1.1+0
⌃ [c7cfdc94] Xorg_libxcb_jll v1.15.0+0
  [cc61e674] Xorg_libxkbfile_jll v1.1.2+0
  [e920d4aa] Xorg_xcb_util_cursor_jll v0.1.4+0
  [12413925] Xorg_xcb_util_image_jll v0.4.0+1
  [2def613f] Xorg_xcb_util_jll v0.4.0+1
  [975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1
  [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1
  [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1
  [35661453] Xorg_xkbcomp_jll v1.4.6+0
  [33bec58e] Xorg_xkeyboard_config_jll v2.39.0+0
  [c5fb5394] Xorg_xtrans_jll v1.5.0+0
⌃ [3161d3a3] Zstd_jll v1.5.5+0
  [35ca27e7] eudev_jll v3.2.9+0
⌅ [214eeab7] fzf_jll v0.35.1+0
  [1a1c6b14] gperf_jll v3.1.1+0
⌃ [a4ae2306] libaom_jll v3.4.0+0
⌃ [0ac62f75] libass_jll v0.15.1+0
  [2db6ffa8] libevdev_jll v1.11.0+0
⌃ [f638f0a6] libfdk_aac_jll v2.0.2+0
  [36db933b] libinput_jll v1.18.0+0
⌃ [b53b4c65] libpng_jll v1.6.38+0
⌃ [f27f6e37] libvorbis_jll v1.3.7+1
⌃ [f8abcde7] micromamba_jll v1.4.9+0
  [009596ad] mtdev_jll v1.1.6+0
⌅ [1270edf5] x264_jll v2021.5.5+0
⌅ [dfaa095f] x265_jll v3.5.0+0
  [d8fb68d0] xkbcommon_jll v1.4.1+1
  [0dad84c5] ArgTools v1.1.1
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [8ba89e20] Distributed
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching
  [9fa8497b] Future
  [b77e0a4c] InteractiveUtils
  [4af54fe1] LazyArtifacts
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.10.0
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization
  [1a1011a3] SharedArrays
  [6462fe0b] Sockets
  [2f01184e] SparseArrays v1.10.0
  [10745b16] Statistics v1.10.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.4.0+0
  [e37daf67] LibGit2_jll v1.6.4+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.2+1
  [14a3606d] MozillaCACerts_jll v2023.1.10
  [4536629a] OpenBLAS_jll v0.3.23+4
  [05823500] OpenLibm_jll v0.8.1+2
  [efcefdf7] PCRE2_jll v10.42.0+1
  [bea87d4a] SuiteSparse_jll v7.2.1+1
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.8.0+1
  [8e850ede] nghttp2_jll v1.52.0+1
  [3f19e933] p7zip_jll v17.4.0+2
Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Did you keep the Manifest from these old days?

Yes! Here are some relevant entries:

[[deps.PythonCall]]
deps = ["CondaPkg", "Dates", "Libdl", "MacroTools", "Markdown", "Pkg", "REPL", "Requires", "Serialization", "Tables", "UnsafePointers"]
git-tree-sha1 = "70af6bdbde63d7d0a4ea99f3e890ebdb55e9d464"
uuid = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d"
version = "0.9.14"

[[deps.PythonPlot]]
deps = ["Colors", "CondaPkg", "LaTeXStrings", "PythonCall", "Sockets", "Test", "VersionParsing"]
git-tree-sha1 = "88b305afa25e1bc4379f182152273dfc55a814b4"
uuid = "274fc56d-3b97-40fa-a1cd-1b4a50311bf9"
version = "1.0.3"


[[deps.Plots]]
deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"]
git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5"
uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
version = "1.39.0"

    [deps.Plots.extensions]
    FileIOExt = "FileIO"
    GeometryBasicsExt = "GeometryBasics"
    IJuliaExt = "IJulia"
    ImageInTerminalExt = "ImageInTerminal"
    UnitfulExt = "Unitful"

    [deps.Plots.weakdeps]
    FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
    GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326"
    IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a"
    ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254"
    Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"

If you kept the same Manifest and just instantiated it, everything should work exactly the same on the Julia side. By elimination, my prime suspect is that you might be using a newer version of Python where something was deleted compared to when you last tried it?

1 Like

Yeah, Julia version, Manifest, and Project files are all the same, so I guess it is something python related.