Hello, trying to run the following code and having issues with package precompilation from an existing Project.toml file on a new machine. Flux is just an example package, there are ~40 more packages which error out but the stacktrace is too long and I figured it’s the same issue. If any other extra information is necessary - please let me know. Otherwise any help is greatly appreciated (I realise that some directory is missing, but not sure how to properly create it).
(@v1.8) pkg> activate .
Activating project at `/disk/scratch/s1788788/NODE_work/recode_v1`
(node_work) pkg> status
Project node_work v0.1.0
Status `/disk/scratch/s1788788/NODE_work/recode_v1/Project.toml`
[6e4b80f9] BenchmarkTools v1.3.2
[aae7a2af] DiffEqFlux v1.52.0
[0c46a032] DifferentialEquations v7.6.0
[31c24e10] Distributions v0.25.79
[5789e2e9] FileIO v1.16.0
[587475ba] Flux v0.13.8
[c8e1da08] IterTools v1.4.0
[033835bb] JLD2 v0.4.28
[d3d80556] LineSearches v7.2.0
[429524aa] Optim v1.7.3
[7f7a1694] Optimization v3.9.2
[36348300] OptimizationOptimJL v0.1.4
[d330b81b] PyPlot v2.11.0
[295af30f] Revise v3.4.0
[ade2ca70] Dates
julia> import Flux
[ Info: Precompiling Flux [587475ba-b771-5e3f-ad9e-33799f191a9c]
ERROR: LoadError: InitError: could not load library "/afs/inf.ed.ac.uk/user/s17/s1788788/.julia/artifacts/abf4b5086b4eb867021118c85b2cc11a15b764a9/lib/libopenspecfun.so"
/afs/inf.ed.ac.uk
/user/s17/s1788788/.julia/artifacts/abf4b5086b4eb867021118c85b2cc11a15b764a9/lib/libopenspecfun.so: cannot open shared object file: No such file or directory
Stacktrace:
[1] dlopen(s::String, flags::UInt32; throw_error::Bool)
@ Base.Libc.Libdl ./libdl.jl:117
[2] dlopen(s::String, flags::UInt32)
@ Base.Libc.Libdl ./libdl.jl:116
[3] macro expansion
@ ~/.julia/packages/JLLWrappers/QpMQW/src/products/library_generators.jl:54 [inlined]
[4] __init__()
@ OpenSpecFun_jll ~/.julia/packages/OpenSpecFun_jll/1Zaof/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:9
[5] _include_from_serialized(pkg::Base.PkgId, path::String, depmods::Vector{Any})
@ Base ./loading.jl:831
[6] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt64)
@ Base ./loading.jl:1039
[7] _require(pkg::Base.PkgId)
@ Base ./loading.jl:1315
[8] _require_prelocked(uuidkey::Base.PkgId)
@ Base ./loading.jl:1200
[9] macro expansion
@ ./loading.jl:1180 [inlined]
[10] macro expansion
@ ./lock.jl:223 [inlined]
[11] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1144
[12] include
@ ./Base.jl:419 [inlined]
[13] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String},
dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}},
source::String)
@ Base ./loading.jl:1554
[14] top-level scope
@ stdin:1
during initialization of module OpenSpecFun_jll
in expression starting at /afs/inf.ed.ac.uk/user/s17/s1788788/.julia/packages/SpecialFunctions/hefUc
/src/SpecialFunctions.jl:1
in expression starting at stdin:1
ERROR: LoadError: Failed to precompile SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] to /afs/inf.ed.ac.uk/user/s17/s1788788/.julia/compiled/v1.8/SpecialFunctions/jl_TAanta.
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base ./loading.jl:1707
[3] compilecache
@ ./loading.jl:1651 [inlined]
[4] _require(pkg::Base.PkgId)
@ Base ./loading.jl:1337
[5] _require_prelocked(uuidkey::Base.PkgId)
@ Base ./loading.jl:1200
[6] macro expansion
@ ./loading.jl:1180 [inlined]
[7] macro expansion
@ ./lock.jl:223 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1144
[9] include
@ ./Base.jl:419 [inlined]
[10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String},
dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}},
source::Nothing)
@ Base ./loading.jl:1554
[11] top-level scope
@ stdin:1
in expression starting at /afs/inf.ed.ac.uk/user/s17/s1788788/.julia/packages/Flux/FKl3M/src/Flux.jl:1
in expression starting at stdin:1 ERROR: Failed to precompile Flux [587475ba-b771-5e3f-ad9e-33799f191a9c] to /afs/inf.ed.ac.uk/user/s17/s1788788/.julia/compiled/v1.8/Flux/jl_0re63l.
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base ./loading.jl:1707
[3] compilecache
@ ./loading.jl:1651 [inlined]
[4] _require(pkg::Base.PkgId)
@ Base ./loading.jl:1337
[5] _require_prelocked(uuidkey::Base.PkgId)
@ Base ./loading.jl:1200
[6] macro expansion
@ ./loading.jl:1180 [inlined]
[7] macro expansion @ ./lock.jl:223 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1144
] I tried the solutions above and nothing seems to work. Last semester (with a much larger class, nearly 200) this