Error in precompiling JuMP on Julia 0.6

deepakagrawal · January 19, 2017, 2:55am

WARNING: Method definition exp(ForwardDiff.Dual{N, T} where T<:Real where N) in module ForwardDiff at /home/deepak/.julia/v0.6/ForwardDiff/src/dual.jl:336 overwritten at /home/deepak/.julia/v0.6/ForwardDiff/src/dual.jl:311.
WARNING: Method definition sqrt(ForwardDiff.Dual{N, T} where T<:Real where N) in module ForwardDiff at /home/deepak/.julia/v0.6/ForwardDiff/src/dual.jl:341 overwritten at /home/deepak/.julia/v0.6/ForwardDiff/src/dual.jl:311.
ERROR: LoadError: LoadError: ArgumentError: method definition for Type at /home/deepak/.julia/v0.6/DataStructures/src/hash_dict.jl:72 has free type variables
Stacktrace:
 [1] include_from_node1(::String) at ./loading.jl:532
 [2] include(::String) at ./sysimg.jl:14
 [3] include_from_node1(::String) at ./loading.jl:532
 [4] include(::String) at ./sysimg.jl:14
 [5] anonymous at ./<missing>:2
while loading /home/deepak/.julia/v0.6/DataStructures/src/hash_dict.jl, in expression starting on line 72
while loading /home/deepak/.julia/v0.6/DataStructures/src/DataStructures.jl, in expression starting on line 70
ERROR: LoadError: LoadError: Failed to precompile DataStructures to /home/deepak/.julia/lib/v0.6/DataStructures.ji.
Stacktrace:
 [1] compilecache(::String) at ./loading.jl:666
 [2] require(::Symbol) at ./loading.jl:424
 [3] include_from_node1(::String) at ./loading.jl:532
 [4] include(::String) at ./sysimg.jl:14
 [5] include_from_node1(::String) at ./loading.jl:532
 [6] include(::String) at ./sysimg.jl:14
 [7] anonymous at ./<missing>:2
while loading /home/deepak/.julia/v0.6/ReverseDiffSparse/src/coloring.jl, in expression starting on line 3
while loading /home/deepak/.julia/v0.6/ReverseDiffSparse/src/ReverseDiffSparse.jl, in expression starting on line 16
ERROR: LoadError: Failed to precompile ReverseDiffSparse to /home/deepak/.julia/lib/v0.6/ReverseDiffSparse.ji.
Stacktrace:
 [1] compilecache(::String) at ./loading.jl:666
 [2] require(::Symbol) at ./loading.jl:424
 [3] include_from_node1(::String) at ./loading.jl:532
 [4] include(::String) at ./sysimg.jl:14
 [5] anonymous at ./<missing>:2
while loading /home/deepak/.julia/v0.6/JuMP/src/JuMP.jl, in expression starting on line 21
ERROR: Failed to precompile JuMP to /home/deepak/.julia/lib/v0.6/JuMP.ji.
Stacktrace:
 [1] compilecache(::String) at ./loading.jl:666
 [2] require(::Symbol) at ./loading.jl:453

ihnorton · January 19, 2017, 3:12am

Use 0.5 unless you are willing, and working, to update packages for upstream changes.

It will be a bit before JuMP and all of its dependencies catch up with the breaking changes in 0.6. See, e.g., JuliaOpt/MathProgBase.jl#150.

github.com/jump-dev/JuMP.jl

Failed to precompile JuMP

opened 05:10AM - 18 Jan 17 UTC

closed 01:29PM - 31 Jan 17 UTC

poulson

From a fresh build of `git HEAD` of Julia: ``` julia> Pkg.add("JuMP") INFO: I…nitializing package repository /home/poulson/.julia/v0.6 INFO: Cloning METADATA from https://github.com/JuliaLang/METADATA.jl INFO: Cloning cache of Calculus from https://github.com/johnmyleswhite/Calculus.jl.git INFO: Cloning cache of Compat from https://github.com/JuliaLang/Compat.jl.git INFO: Cloning cache of DataStructures from https://github.com/JuliaLang/DataStructures.jl.git INFO: Cloning cache of DiffBase from https://github.com/JuliaDiff/DiffBase.jl.git INFO: Cloning cache of ForwardDiff from https://github.com/JuliaDiff/ForwardDiff.jl.git INFO: Cloning cache of JuMP from https://github.com/JuliaOpt/JuMP.jl.git INFO: Cloning cache of Lazy from https://github.com/MikeInnes/Lazy.jl.git INFO: Cloning cache of MacroTools from https://github.com/MikeInnes/MacroTools.jl.git INFO: Cloning cache of MathProgBase from https://github.com/JuliaOpt/MathProgBase.jl.git INFO: Cloning cache of NaNMath from https://github.com/mlubin/NaNMath.jl.git INFO: Cloning cache of ReverseDiffSparse from https://github.com/mlubin/ReverseDiffSparse.jl.git INFO: Installing Calculus v0.1.15 INFO: Installing Compat v0.12.0 INFO: Installing DataStructures v0.5.1 INFO: Installing DiffBase v0.0.2 INFO: Installing ForwardDiff v0.3.3 INFO: Installing JuMP v0.15.0 INFO: Installing Lazy v0.11.5 INFO: Installing MacroTools v0.3.4 INFO: Installing MathProgBase v0.5.10 INFO: Installing NaNMath v0.2.2 INFO: Installing ReverseDiffSparse v0.6.0 INFO: Package database updated julia> using JuMP INFO: Precompiling module JuMP. WARNING: Array{T}(::Type{T},m::Int) is deprecated, use Array{T,1}(m) instead. Stacktrace: [1] depwarn(::String, ::Symbol) at ./deprecated.jl:64 [2] Array(::Type{Tuple{Symbol,Expr}}, ::Int64) at ./deprecated.jl:50 [3] include_from_node1(::String) at ./loading.jl:532 [4] include(::String) at ./sysimg.jl:14 [5] include_from_node1(::String) at ./loading.jl:532 [6] include(::String) at ./sysimg.jl:14 [7] anonymous at ./<missing>:2 [8] eval(::Module, ::Any) at ./boot.jl:238 [9] process_options(::Base.JLOptions) at ./client.jl:285 [10] _start() at ./client.jl:374 while loading /home/poulson/.julia/v0.6/Calculus/src/differentiate.jl, in expression starting on line 198 WARNING: Method definition exp(ForwardDiff.Dual{N, T} where T<:Real) in module ForwardDiff at /home/poulson/.julia/v0.6/ForwardDiff/src/dual.jl:311 overwritten at /home/poulson/.julia/v0.6/ForwardDiff/src/dual.jl:336. WARNING: Method definition sqrt(ForwardDiff.Dual{N, T} where T<:Real) in module ForwardDiff at /home/poulson/.julia/v0.6/ForwardDiff/src/dual.jl:311 overwritten at /home/poulson/.julia/v0.6/ForwardDiff/src/dual.jl:341. WARNING: Method definition exp(ForwardDiff.Dual{N, T} where T<:Real where N) in module ForwardDiff at /home/poulson/.julia/v0.6/ForwardDiff/src/dual.jl:336 overwritten at /home/poulson/.julia/v0.6/ForwardDiff/src/dual.jl:311. WARNING: Method definition sqrt(ForwardDiff.Dual{N, T} where T<:Real where N) in module ForwardDiff at /home/poulson/.julia/v0.6/ForwardDiff/src/dual.jl:341 overwritten at /home/poulson/.julia/v0.6/ForwardDiff/src/dual.jl:311. ERROR: LoadError: LoadError: ArgumentError: method definition for Type at /home/poulson/.julia/v0.6/DataStructures/src/hash_dict.jl:72 has free type variables Stacktrace: [1] include_from_node1(::String) at ./loading.jl:532 [2] include(::String) at ./sysimg.jl:14 [3] include_from_node1(::String) at ./loading.jl:532 [4] include(::String) at ./sysimg.jl:14 [5] anonymous at ./<missing>:2 while loading /home/poulson/.julia/v0.6/DataStructures/src/hash_dict.jl, in expression starting on line 72 while loading /home/poulson/.julia/v0.6/DataStructures/src/DataStructures.jl, in expression starting on line 70 ERROR: LoadError: LoadError: Failed to precompile DataStructures to /home/poulson/.julia/lib/v0.6/DataStructures.ji. Stacktrace: [1] compilecache(::String) at ./loading.jl:666 [2] require(::Symbol) at ./loading.jl:424 [3] include_from_node1(::String) at ./loading.jl:532 [4] include(::String) at ./sysimg.jl:14 [5] include_from_node1(::String) at ./loading.jl:532 [6] include(::String) at ./sysimg.jl:14 [7] anonymous at ./<missing>:2 while loading /home/poulson/.julia/v0.6/ReverseDiffSparse/src/coloring.jl, in expression starting on line 3 while loading /home/poulson/.julia/v0.6/ReverseDiffSparse/src/ReverseDiffSparse.jl, in expression starting on line 16 ERROR: LoadError: Failed to precompile ReverseDiffSparse to /home/poulson/.julia/lib/v0.6/ReverseDiffSparse.ji. Stacktrace: [1] compilecache(::String) at ./loading.jl:666 [2] require(::Symbol) at ./loading.jl:424 [3] include_from_node1(::String) at ./loading.jl:532 [4] include(::String) at ./sysimg.jl:14 [5] anonymous at ./<missing>:2 while loading /home/poulson/.julia/v0.6/JuMP/src/JuMP.jl, in expression starting on line 21 ERROR: Failed to precompile JuMP to /home/poulson/.julia/lib/v0.6/JuMP.ji. Stacktrace: [1] compilecache(::String) at ./loading.jl:666 [2] require(::Symbol) at ./loading.jl:453 ```

deepakagrawal · January 19, 2017, 3:17am

Thank you. Will use 0.5 for now.