Create individual plot and save as pdf

[sai_matcha]

Hi … i used to use this code in r studio to generate individual plots for each id and save them as combined pdf for the offline evaluation. can someone help me to translate code to julia.

pdf("path\\indplots.pdf")
for(i in unique(df$ID))
{
  print((ggplot(subset(df,df$ID == i),aes(x=TAD,y=DV))+
           geom_point()+
           xlab("TAD (hrs)")+
           ylab("Plasma concentration (mg/L)")+
           ggtitle(paste(as.character(i)))+
           theme(panel.grid.minor=element_blank(),
                 panel.grid.major=element_blank(),
                 panel.background = element_blank(),
                 plot.title=element_text(hjust=0.5),
                 legend.position="right",
                 legend.key=(element_rect(colour='white',fill='white')),
                 plot.margin=unit(c(0.5,0.5,0.5,0.5),"cm"),
                 legend.text=element_text(colour="black",size=10),
                 axis.text.x=element_text(colour="black",size=10),
                 axis.text.y=element_text(colour="black",size=10),
                 axis.title=element_text(colour="black",size=14),
                 axis.line.x = element_line( colour="black",size=1,linetype ="solid"),
                 axis.line.y = element_line( colour="black",size=1,linetype ="solid"))))
}
dev.off()

here i am focusing more on saving the individual plots as combined pdf ,than the codes to customise plot.
Thanks.

[lmiq]

Maybe this?

[ANN] PDFmerger.jl: produce multiple plots on separate pages in one PDF file

Hi all, I’m happy to announce the little PDFmerger.jl package to merge PDF (Portable Document Format) files. It is tested on Linux, OS X, and Windows and does not require (manual) installation of external tools. Besides simple installation, it provides a convenient way to produce a PDF file containing multiple plots on different pages. This topic came up before and there is an open issue for Plots.jl. using Plots using PDFmerger: append_pdf! for t in 1:5 p = plot(rand(33), title="$t") …

[jheinen]

That would be a GR solution:

using GR
beginprint("plots.pdf")
for i in 1:10 plot(randn(10,4)) end
endprint()

[sai_matcha]

julia> using GR

julia> using Plots

julia> beginprint("plots.pdf")

julia> for i in 1:10 plot(randn(10,4)) end
ERROR: UndefVarError: plot not defined
Stacktrace:
 [1] top-level scope
   @ ./none:1

julia> endprint()

may i get some help, my plots stopped working here !.

[jheinen]

Plots.jl doesn’t support it natively. But you can trick Plots:

using Plots

Plots.GR.beginprint("plots.pdf")
gr(show=true)

for i in 1:10 plot(randn(10)) end

Plots.GR.endprint()

Not very pretty, but works.

[photor]

I encountered the following error using your code (GR version: 0.63.1):

SystemError: opening file "C:\\Users\\ytian\\AppData\\Local\\Temp\\jl_SbuQV4fEbT.svg": No such file or directory

Stacktrace:
  [1] systemerror(p::String, errno::Int32; extrainfo::Nothing)
    @ Base .\error.jl:168
  [2] #systemerror#62
    @ .\error.jl:167 [inlined]
  [3] systemerror
    @ .\error.jl:167 [inlined]
  [4] open(fname::String; lock::Bool, read::Bool, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing)
    @ Base .\iostream.jl:293
  [5] open(fname::String, mode::String; lock::Bool)
    @ Base .\iostream.jl:355
  [6] open
    @ .\iostream.jl:355 [inlined]
  [7] _readfile(path::String)
    @ GR C:\Users\ytian\.julia\packages\GR\KPElO\src\GR.jl:3710
  [8] show()
    @ GR C:\Users\ytian\.julia\packages\GR\KPElO\src\GR.jl:3768
  [9] plot_data(flag::Bool)
    @ GR.jlgr C:\Users\ytian\.julia\packages\GR\KPElO\src\jlgr.jl:1553
 [10] plot_data
    @ C:\Users\ytian\.julia\packages\GR\KPElO\src\jlgr.jl:1198 [inlined]
 [11] plot(args::Matrix{Float64}; kv::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ GR.jlgr C:\Users\ytian\.julia\packages\GR\KPElO\src\jlgr.jl:1763
 [12] plot
    @ C:\Users\ytian\.julia\packages\GR\KPElO\src\jlgr.jl:1755 [inlined]
 [13] top-level scope
    @ .\In[2]:4
 [14] eval
    @ .\boot.jl:360 [inlined]
 [15] include_string(mapexpr::typeof(REPL.softscope), mod::Module, code::String, filename::String)
    @ Base .\loading.jl:1116

[sai_matcha]

@jheinen

using Plots

Plots.GR.beginprint("plots.pdf")
gr(show=true)

for i in 1:10 plot(randn(10)) end

Plots.GR.endprint()

still same error

julia> using Plots

julia> Plots.GR.beginprint("plots.pdf")

julia> gr(show=true)
Plots.GRBackend()

julia> for i in 1:10 plot(randn(10)) end
ERROR: UndefVarError: plot not defined
Stacktrace:
 [1] top-level scope
   @ ./none:1

julia> Plots.GR.endprint()

[photor]

Please use the following:

for i in 1:10 GR.plot(randn(10)) end

[jheinen]

@photor

Please use the following:

for i in 1:10 GR.plot(randn(10)) end

No, that was not the idea. You probably forgot to restart Julia and “used” both GR and Plots, which cannot work.

[sai_matcha]

Thank you, it works now.
my purpose is to get a separate for each indiviadul . but this code gives me a plot od all values in single page . please rectify the code
this is the code i have used

df = DataFrame(id = 1:5, a = 10:14, b = 5:9)
Plots.GR.beginprint("plots.pdf")
gr(show=true)
for i in df.id GR.plot(df.a,df.b) end
Plots.GR.endprint()

i want df.a vs df.b plot for each id in a separate pages of pdf file.
Thank you

[jheinen]

using DataFrames
using Plots
gr(show=true)
df = DataFrame(id = 1:5, a = 10:14, b = 5:9)
Plots.GR.beginprint("plots.pdf")
for i in df.id plot(df.a,df.b .* i) end
Plots.GR.endprint()

The result is one PDF with 5 pages.

[sai_matcha]

i copied the excat code , not undersating why plots are not working

julia> using DataFrames

julia> using Plots

julia> gr(show=true)
Plots.GRBackend()

julia> df = DataFrame(id = 1:5, a = 10:14, b = 5:9)
5×3 DataFrame
 Row │ id     a      b     
     │ Int64  Int64  Int64 
─────┼─────────────────────
   1 │     1     10      5
   2 │     2     11      6
   3 │     3     12      7
   4 │     4     13      8
   5 │     5     14      9

julia> Plots.GR.beginprint("plots.pdf")

julia> for i in df.id plot(df.a,df.b .* i) end
ERROR: UndefVarError: plot not defined
Stacktrace:
 [1] top-level scope
   @ ./none:1

julia> Plots.GR.endprint()

[jheinen]

Are you in a notebook? Did you really restart the Julia kernel? Or, do you “auto-load” packages in your startup files?

[sai_matcha]

im on atom. i have comletely closed and open the julia . still the same result

[sai_matcha]

this worked after changing the plot to Plots.plot.
but all the 5 pages have same plot.
plot i want is ,
10 on x , 5 on y for id 1 in first page,
11 on x , 6 on y for id 2 in second page
.
.
14 on x , 9 on y for id 5 in last page.

just plots for individual id’s.

is there a way to get that. Thank you

[jheinen]

Sorry - can’t help furthermore as I cannot reproduce the behaviour on any platform.

[sai_matcha]

thank you very much for your support.

can you say , how you got plots.
each id was printed in separate page ?

[photor]

Could you help figure out the problem in this post:

Create individual plot and save as pdf

I encountered the following error using your code (GR version: 0.63.1): SystemError: opening file "C:\\Users\\ytian\\AppData\\Local\\Temp\\jl_SbuQV4fEbT.svg": No such file or directory Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base .\error.jl:168 [2] #systemerror#62 @ .\error.jl:167 [inlined] [3] systemerror @ .\error.jl:167 [inlined] [4] open(fname::String; lock::Bool, read::Bool, write::Nothing, create::Nothing, truncate::Nothing, append::…

Thanks!