I have quite a number of those hodge-podge packages on github: ) One that might be useful to someone is https://github.com/grero/RippleTools.jl which basically extracts data recorded from the Ripple data acquisition system (https://rippleneuro.com).
3 Likes
If you set up such an organization, to help with the neuroanatomy part I’d move https://github.com/timholy/AllenBrain.jl there. (It’s “just for me” right now and hasn’t been updated to Julia 1.x, but all that could happen if there are other users willing to help out.)
2 Likes
This is awesome! I’ve been thinking about adapting the allen brain atlas into a package for about a week now.
I have some LabJack API bindings that I suppose could be rolled into a usable package without too much effort.
Also, about a couple weeks away from being able to make a light-field microscopy simulation/deconvolution package public.
Is anybody of you part of the Human Brain Project? Please have a look at this thread. Thanks!
I am. Thanks for the pointer!
We also have some tools(https://experica.org) for doing vision experiment and data exporting.
The data analysis part are almost shifted to Julia, which deal with Ephys(Neuropixels), 2P and ISI.
A dedicated organization with some basic packages will definitely help a lot of people and encourage collaboration.
I am. Thank you for the link.
Is there an organization already?
Not that I know. In Trieste (Italy), we launched a group - https://julia-trieste.github.io - but it is not focused on Comp. Neuroscience. At Antwerpen University, where I worked from 2008 until 2019, I taught a class on Comp. Neuroscience using Julia and Jupyter.