What would be a nice way to call Julia from Python using a different process?

General Usage
, , ,
1

I have a small number of Julia functions that I want to call from Python. We tried PythonCall which works for a toy example, but not when integrated in the full Python program, which might be due to library incompatibilities or multi-threading.

Is there a simple way to call a Julia function using inter-process communication?

The two main Julia functions we want to call are:

function step(;v_ro = nothing, set_torque=nothing, v_wind_gnd=set.v_wind, wind_dir=0.0, depower=0.0, steering=0.0)
    # do some work
    nothing
end

and

function sys_state()
    SysState(kps4)
end

SysState is a large struct which would in Python best be represented as a dict with elements of different types.

Two questions:

  1. What would be the best low level communication protocol? I thought of UDP or ZMQ.
  2. How can I serialize the struct in Julia and de-serialize it in Python?

A call overhead of 1ms would be fine, but not much more.

2

I haven’t tried it, but I found GitHub - joshbode/zmq-example: Example connecting Python to Julia and R using ØMQ which seems to do exactly that. It’s very old but the code looks basically runnable to me (and very simple).

3

Thanks for the link, but it does not do any serialization/ deserialization.

I thought about using GitHub - OxygenFramework/Oxygen.jl: 💨 A breath of fresh air for programming web apps in Julia because it has nice serialization included, but I would not know how to use it from Python.

4

I would use Arrow for cross-language serialization, or define some manual transformations between your data structures and JSON and implement them on both sides (using JSON3/StructTypes on the julia side).

1 Like
5

I am trying Oxygen.jl . Not working:

using Oxygen, HTTP

function start_server()
    @get "/greet" function(req::HTTP.Request)
        return "hello world!"
    end

    # start the web server
    serve()
end

start_server()

Client:

In [1]: %run simulate_http.py
---------------------------------------------------------------------------
gaierror                                  Traceback (most recent call last)
~/repos/pykitesim/simulate_http.py in <module>
      4 connection = http.client.HTTPConnection('http://127.0.0.1:8080')
      5 
----> 6 connection.request('GET', '/greet')
      7 
      8 response = connection.getresponse()

~/repos/pykitesim/.pixi/envs/default/lib/python3.8/http/client.py in request(self, method, url, body, headers, encode_chunked)
   1254                 encode_chunked=False):
   1255         """Send a complete request to the server."""
-> 1256         self._send_request(method, url, body, headers, encode_chunked)
   1257 
   1258     def _send_request(self, method, url, body, headers, encode_chunked):

~/repos/pykitesim/.pixi/envs/default/lib/python3.8/http/client.py in _send_request(self, method, url, body, headers, encode_chunked)
   1300             # default charset of iso-8859-1.
   1301             body = _encode(body, 'body')
-> 1302         self.endheaders(body, encode_chunked=encode_chunked)
   1303 
   1304     def getresponse(self):

~/repos/pykitesim/.pixi/envs/default/lib/python3.8/http/client.py in endheaders(self, message_body, encode_chunked)
   1249         else:
   1250             raise CannotSendHeader()
-> 1251         self._send_output(message_body, encode_chunked=encode_chunked)
   1252 
   1253     def request(self, method, url, body=None, headers={}, *,

~/repos/pykitesim/.pixi/envs/default/lib/python3.8/http/client.py in _send_output(self, message_body, encode_chunked)
   1009         msg = b"\r\n".join(self._buffer)
   1010         del self._buffer[:]
-> 1011         self.send(msg)
   1012 
   1013         if message_body is not None:

~/repos/pykitesim/.pixi/envs/default/lib/python3.8/http/client.py in send(self, data)
    949         if self.sock is None:
    950             if self.auto_open:
--> 951                 self.connect()
    952             else:
    953                 raise NotConnected()

~/repos/pykitesim/.pixi/envs/default/lib/python3.8/http/client.py in connect(self)
    920     def connect(self):
    921         """Connect to the host and port specified in __init__."""
--> 922         self.sock = self._create_connection(
    923             (self.host,self.port), self.timeout, self.source_address)
    924         self.sock.setsockopt(socket.IPPROTO_TCP, socket.TCP_NODELAY, 1)

~/repos/pykitesim/.pixi/envs/default/lib/python3.8/socket.py in create_connection(address, timeout, source_address)
    785     host, port = address
    786     err = None
--> 787     for res in getaddrinfo(host, port, 0, SOCK_STREAM):
    788         af, socktype, proto, canonname, sa = res
    789         sock = None

~/repos/pykitesim/.pixi/envs/default/lib/python3.8/socket.py in getaddrinfo(host, port, family, type, proto, flags)
    916     # and socket type values to enum constants.
    917     addrlist = []
--> 918     for res in _socket.getaddrinfo(host, port, family, type, proto, flags):
    919         af, socktype, proto, canonname, sa = res
    920         addrlist.append((_intenum_converter(af, AddressFamily),

gaierror: [Errno -2] Name or service not known

In [2]:

Any idea?

In the browser this URL works:
http://127.0.0.1:8080/greet

6

OK, this works:

import http.client

connection = http.client.HTTPConnection('127.0.0.1:8080')

def remote_call():
    connection.request('GET', '/greet')
    response = connection.getresponse()
    return response.read()

response = remote_call()
print(response.decode())

Calling remote_call() takes 800us to 900us on my laptop, 350us on my desktop.

Next step: Use json.

7

With JSON it really works perfect:

using KiteModels, KitePodModels, Oxygen, HTTP, StructTypes

set::Settings = deepcopy(se())
kcu::KCU = KCU(set)
kps4::KPS4 = KPS4(kcu)

# Add a supporting struct type definition so JSON3 can serialize & deserialize automatically
StructTypes.StructType(::Type{SysState}) = StructTypes.Struct()

function init()
    global integrator
    integrator = KiteModels.init_sim!(kps4, stiffness_factor=0.5, prn=true)
    nothing
end

function start_server(log=true)
    @get "/sys_state" function(req::HTTP.Request)
        SysState(kps4)
    end

    @get "/init" function(req::HTTP.Request)
        init()
    end

    # start the web server
    if log
        serve()
    else
        serve(access_log=nothing)
    end
end

The Python client:

import http.client
import json

connection = http.client.HTTPConnection('127.0.0.1:8080')

def init():
    connection.request('GET', '/init')
    response = connection.getresponse()
    obj = json.loads(response.read())
    return obj

def sys_state():
    connection.request('GET', '/sys_state')
    response = connection.getresponse()
    obj = json.loads(response.read())
    return obj

print(init())
state = sys_state()
print(state)

And the performance is much better than I said in my last post, I did not benchmark correctly:

ipython
%timeit sys_state()
# result: 63.3 µs ± 3.12 µs per loop on Ryzen 7850X
#         99.9 µs ± 5.05 µs per loop on Laptop in performance mode

UPDATE: The final code is available here: GitHub - ufechner7/pykitemodels: Kite power system models for Python

3 Likes