Trouble Compilng v0.6.3 (SuiteSparse fails?)


#1

I print below the error message. This is on Mac OS X with

Fuji-2:julia63 ortner$ clang -v
Apple LLVM version 9.1.0 (clang-902.0.39.2)
Target: x86_64-apple-darwin17.5.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin
Fuji-2:julia63 ortner$ gfortran -v
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/7.3.0_1/libexec/gcc/x86_64-apple-darwin17.3.0/7.3.0/lto-wrapper
Target: x86_64-apple-darwin17.3.0
Configured with: ../configure --build=x86_64-apple-darwin17.3.0 --prefix=/usr/local/Cellar/gcc/7.3.0_1 --libdir=/usr/local/Cellar/gcc/7.3.0_1/lib/gcc/7 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-7 --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc --with-isl=/usr/local/opt/isl --with-system-zlib --enable-checking=release --with-pkgversion='Homebrew GCC 7.3.0_1' --with-bugurl=https://github.com/Homebrew/homebrew-core/issues --disable-nls
Thread model: posix
gcc version 7.3.0 (Homebrew GCC 7.3.0_1)
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: libumfpack.a(umf_di_dump.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: libumfpack.a(umf_dl_dump.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: libumfpack.a(umf_zi_dump.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: libumfpack.a(umf_zl_dump.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: libumfpack.a(umf_di_dump.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: libumfpack.a(umf_dl_dump.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: libumfpack.a(umf_zi_dump.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: libumfpack.a(umf_zl_dump.o) has no symbols
Undefined symbols for architecture x86_64:
  "_dgemm_", referenced from:
      _cholmod_super_numeric in libcholmod.a(cholmod_super_numeric.o)
      _cholmod_super_lsolve in libcholmod.a(cholmod_super_solve.o)
      _cholmod_super_ltsolve in libcholmod.a(cholmod_super_solve.o)
      _cholmod_l_super_numeric in libcholmod.a(cholmod_l_super_numeric.o)
      _cholmod_l_super_lsolve in libcholmod.a(cholmod_l_super_solve.o)
      _cholmod_l_super_ltsolve in libcholmod.a(cholmod_l_super_solve.o)
  "_dgemv_", referenced from:
      _cholmod_super_lsolve in libcholmod.a(cholmod_super_solve.o)
      _cholmod_super_ltsolve in libcholmod.a(cholmod_super_solve.o)
      _cholmod_l_super_lsolve in libcholmod.a(cholmod_l_super_solve.o)
      _cholmod_l_super_ltsolve in libcholmod.a(cholmod_l_super_solve.o)
  "_dpotrf_", referenced from:
      _cholmod_super_numeric in libcholmod.a(cholmod_super_numeric.o)
      _cholmod_l_super_numeric in libcholmod.a(cholmod_l_super_numeric.o)
  "_dsyrk_", referenced from:
      _cholmod_super_numeric in libcholmod.a(cholmod_super_numeric.o)
      _cholmod_l_super_numeric in libcholmod.a(cholmod_l_super_numeric.o)
  "_dtrsm_", referenced from:
      _cholmod_super_numeric in libcholmod.a(cholmod_super_numeric.o)
      _cholmod_super_lsolve in libcholmod.a(cholmod_super_solve.o)
      _cholmod_super_ltsolve in libcholmod.a(cholmod_super_solve.o)
      _cholmod_l_super_numeric in libcholmod.a(cholmod_l_super_numeric.o)
      _cholmod_l_super_lsolve in libcholmod.a(cholmod_l_super_solve.o)
      _cholmod_l_super_ltsolve in libcholmod.a(cholmod_l_super_solve.o)
  "_dtrsv_", referenced from:
      _cholmod_super_lsolve in libcholmod.a(cholmod_super_solve.o)
      _cholmod_super_ltsolve in libcholmod.a(cholmod_super_solve.o)
      _cholmod_l_super_lsolve in libcholmod.a(cholmod_l_super_solve.o)
      _cholmod_l_super_ltsolve in libcholmod.a(cholmod_l_super_solve.o)
  "_zgemm_", referenced from:
      _cholmod_super_numeric in libcholmod.a(cholmod_super_numeric.o)
      _cholmod_super_lsolve in libcholmod.a(cholmod_super_solve.o)
      _cholmod_super_ltsolve in libcholmod.a(cholmod_super_solve.o)
      _cholmod_l_super_numeric in libcholmod.a(cholmod_l_super_numeric.o)
      _cholmod_l_super_lsolve in libcholmod.a(cholmod_l_super_solve.o)
      _cholmod_l_super_ltsolve in libcholmod.a(cholmod_l_super_solve.o)
  "_zgemv_", referenced from:
      _cholmod_super_lsolve in libcholmod.a(cholmod_super_solve.o)
      _cholmod_super_ltsolve in libcholmod.a(cholmod_super_solve.o)
      _cholmod_l_super_lsolve in libcholmod.a(cholmod_l_super_solve.o)
      _cholmod_l_super_ltsolve in libcholmod.a(cholmod_l_super_solve.o)
  "_zherk_", referenced from:
      _cholmod_super_numeric in libcholmod.a(cholmod_super_numeric.o)
      _cholmod_l_super_numeric in libcholmod.a(cholmod_l_super_numeric.o)
  "_zpotrf_", referenced from:
      _cholmod_super_numeric in libcholmod.a(cholmod_super_numeric.o)
      _cholmod_l_super_numeric in libcholmod.a(cholmod_l_super_numeric.o)
  "_ztrsm_", referenced from:
      _cholmod_super_numeric in libcholmod.a(cholmod_super_numeric.o)
      _cholmod_super_lsolve in libcholmod.a(cholmod_super_solve.o)
      _cholmod_super_ltsolve in libcholmod.a(cholmod_super_solve.o)
      _cholmod_l_super_numeric in libcholmod.a(cholmod_l_super_numeric.o)
      _cholmod_l_super_lsolve in libcholmod.a(cholmod_l_super_solve.o)
      _cholmod_l_super_ltsolve in libcholmod.a(cholmod_l_super_solve.o)
  "_ztrsv_", referenced from:
      _cholmod_super_lsolve in libcholmod.a(cholmod_super_solve.o)
      _cholmod_super_ltsolve in libcholmod.a(cholmod_super_solve.o)
      _cholmod_l_super_lsolve in libcholmod.a(cholmod_l_super_solve.o)
      _cholmod_l_super_ltsolve in libcholmod.a(cholmod_l_super_solve.o)
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[1]: *** [/Users/ortner/gits/julia63/usr/manifest/suitesparse] Error 1
make: *** [julia-deps] Error 2

#2

It occurred to me this happened after updating from v0.6.2. I’m going to try to build from a clean clone.