This is a general question, which could be asked in a broader arena, but I wanted to see what people do to keep projects organised.
I often, with the best of intentions, start with a clean basic template of folders: src,fig,data for my project.
If I am doing data science/ML this work well, and if I am generating data through solving diff eq, I can use the same basic flow.
My problem comes when I start adding scripts or subfolders and it just get to a point where I have to spend in hour getting my head in the game. I am just curious if there some method people use to stay productive faster.