How to force an update?

[GunnarFarneback]

@ForceBru

Exactly, so this must be a bug in some package’s [compat] section

The precompile fails because old versions of JuMP (from circa the release of Julia 1.0) relied on some Julia internals which are no longer there. This was fixed long ago in JuMP but it could be argued that those old versions should get retroactive upper bounds on the Julia version in the registry.

@ForceBru

Basically, do update --manifest multiple times until there’s an error.

I’m honestly not sure what update --manifest really means, even after reading the help text, but it seems possible that it doesn’t do what it’s supposed to do in this situation.

@albheim

I have never seen update behave like this, though I assume they use some similar algorithm in the background so maybe it is possible if you have the correct combination of packages. Tried to add some of the packages that changed a lot to the environment to see if update would start acting up also but didn’t get any weird behavior.

The source of this particular problem is that SpecialFunctions recently made a breaking release and until the many packages depending on it catch up with compat, we will see some friction in the package ecosystem. The difficulties with the JuMP+Ipopt combination will disappear as soon as JuMP makes a new release containing Update compat for SpecialFunctions by odow · Pull Request #2829 · jump-dev/JuMP.jl · GitHub.

At the moment Ipopt is compatible with SpecialFunctions 2.0 (*) but JuMP is not. If you insist that you want to have 2.0 of SpecialFunctions, or the resolver for whatever reason decides that it wants it in its resolution, the only way to keep JuMP is to downgrade it to a sufficiently old version that didn’t depend on SpecialFunctions.

(*) Addendum: Actually Ipopt doesn’t depend on SpecialFunctions, neither directly nor indirectly, so there’s something more to this story. The rest of the argument holds anyway.

(*) Addendum 2: Probably Ipopt has nothing to do with this at all. The update -m behavior can be observed from JuMP alone.

[ForceBru]

@albheim

But is update --manifest really what you want to do?

No idea: I was just trying stuff out while attempting to update everything. As far as I understand, update --manifest updates all packages, including those in the manifest. I thought that fits my goal of updating everything.

@albheim

to see if update would start acting up also but didn’t get any weird behavior

Simple update seems to be working fine (doesn’t jump around these “optima”).

[BioTurboNick]

I’m encountering a similar issue, where a package isn’t upgrading but isn’t marked as a problem.

It would be helpful there was a Pkg command to show what other packages have common dependencies that could be leading to a conflict.

[dmetivie]

I think I have a similar issue with JuMP.jl and StatsPlots.jl

(jl_b3d9st) pkg> activate --temp
  Activating new project at `C:\Users\metivier\AppData\Local\Temp\jl_htRAci`

(jl_htRAci) pkg> add JuMP
   Resolving package versions...
    Updating `C:\Users\metivier\AppData\Local\Temp\jl_htRAci\Project.toml`
  [4076af6c] + JuMP v1.23.1
    Updating `C:\Users\metivier\AppData\Local\Temp\jl_htRAci\Manifest.toml`
  [6e4b80f9] + BenchmarkTools v1.5.0
  [523fee87] + CodecBzip2 v0.8.4
  [944b1d66] + CodecZlib v0.7.6
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.16.0
  [864edb3b] + DataStructures v0.18.20
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [ffbed154] + DocStringExtensions v0.9.3
  [f6369f11] + ForwardDiff v0.10.36
  [92d709cd] + IrrationalConstants v0.2.2
  [692b3bcd] + JLLWrappers v1.6.0
  [682c06a0] + JSON v0.21.4
  [4076af6c] + JuMP v1.23.1
  [2ab3a3ac] + LogExpFunctions v0.3.28
  [1914dd2f] + MacroTools v0.5.13
  [b8f27783] + MathOptInterface v1.31.2
  [d8a4904e] + MutableArithmetics v1.4.6
  [77ba4419] + NaNMath v1.0.2
  [bac558e1] + OrderedCollections v1.6.3
  [69de0a69] + Parsers v2.8.1
  [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [276daf66] + SpecialFunctions v2.4.0
  [1e83bf80] + StaticArraysCore v1.4.3
  [3bb67fe8] + TranscodingStreams v0.11.2
  [6e34b625] + Bzip2_jll v1.0.8+1
  [efe28fd5] + OpenSpecFun_jll v0.5.5+0
  [0dad84c5] + ArgTools v1.1.1
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching
  [b77e0a4c] + InteractiveUtils
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.10.0
  [de0858da] + Printf
  [9abbd945] + Profile
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays v1.10.0
  [10745b16] + Statistics v1.10.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.4.0+0
  [e37daf67] + LibGit2_jll v1.6.4+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.2+1
  [14a3606d] + MozillaCACerts_jll v2023.1.10
  [4536629a] + OpenBLAS_jll v0.3.23+4
  [05823500] + OpenLibm_jll v0.8.1+2
  [bea87d4a] + SuiteSparse_jll v7.2.1+1
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.52.0+1
  [3f19e933] + p7zip_jll v17.4.0+2

(jl_htRAci) pkg> add StatsPlots
   Resolving package versions...
    Updating `C:\Users\metivier\AppData\Local\Temp\jl_htRAci\Project.toml`
  [f3b207a7] + StatsPlots v0.15.7
    Updating `C:\Users\metivier\AppData\Local\Temp\jl_htRAci\Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
  [79e6a3ab] + Adapt v4.0.4
  [66dad0bd] + AliasTables v1.1.3
  [7d9fca2a] + Arpack v0.5.4
  [13072b0f] + AxisAlgorithms v1.1.0
  [b99e7846] + BinaryProvider v0.5.10
  [d1d4a3ce] + BitFlags v0.1.9
  [d360d2e6] + ChainRulesCore v1.24.0
  [aaaa29a8] + Clustering v0.15.7
  [35d6a980] + ColorSchemes v3.26.0
  [3da002f7] + ColorTypes v0.11.5
  [c3611d14] + ColorVectorSpace v0.10.0
  [5ae59095] + Colors v0.12.11
  [f0e56b4a] + ConcurrentUtilities v2.4.2
  [d38c429a] + Contour v0.6.3
  [9a962f9c] + DataAPI v1.16.0
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [b4f34e82] + Distances v0.10.11
  [31c24e10] + Distributions v0.25.111
  [460bff9d] + ExceptionUnwrapping v0.1.10
⌃ [c87230d0] + FFMPEG v0.2.4
  [7a1cc6ca] + FFTW v1.8.0
  [1a297f60] + FillArrays v1.13.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [1fa38f19] + Format v1.3.7
  [28b8d3ca] + GR v0.73.7
  [42e2da0e] + Grisu v1.0.2
  [cd3eb016] + HTTP v1.10.8
  [34004b35] + HypergeometricFunctions v0.3.24
  [a98d9a8b] + Interpolations v0.15.1
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [1019f520] + JLFzf v0.1.8
  [5ab0869b] + KernelDensity v0.6.9
  [b964fa9f] + LaTeXStrings v1.3.1
  [23fbe1c1] + Latexify v0.16.5
  [e6f89c97] + LoggingExtras v1.0.3
  [739be429] + MbedTLS v1.1.9
  [442fdcdd] + Measures v0.3.2
  [e1d29d7a] + Missings v1.2.0
  [6f286f6a] + MultivariateStats v0.10.3
  [b8a86587] + NearestNeighbors v0.4.18
  [510215fc] + Observables v0.5.5
  [6fe1bfb0] + OffsetArrays v1.14.1
  [4d8831e6] + OpenSSL v1.4.3
  [90014a1f] + PDMats v0.11.31
  [b98c9c47] + Pipe v1.3.0
  [ccf2f8ad] + PlotThemes v3.2.0
  [995b91a9] + PlotUtils v1.4.1
⌃ [91a5bcdd] + Plots v1.40.1
  [43287f4e] + PtrArrays v1.2.1
  [1fd47b50] + QuadGK v2.11.0
  [c84ed2f1] + Ratios v0.4.5
  [3cdcf5f2] + RecipesBase v1.3.4
  [01d81517] + RecipesPipeline v0.6.12
  [189a3867] + Reexport v1.2.2
  [05181044] + RelocatableFolders v1.0.1
  [ae029012] + Requires v1.3.0
  [79098fc4] + Rmath v0.7.1
  [6c6a2e73] + Scratch v1.2.1
  [91c51154] + SentinelArrays v1.4.5
  [992d4aef] + Showoff v1.0.3
  [777ac1f9] + SimpleBufferStream v1.1.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [90137ffa] + StaticArrays v1.9.7
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.3
  [4c63d2b9] + StatsFuns v1.3.1
  [f3b207a7] + StatsPlots v0.15.7
  [ab02a1b2] + TableOperations v1.2.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [62fd8b95] + TensorCore v0.1.1
  [5c2747f8] + URIs v1.5.1
  [1cfade01] + UnicodeFun v0.4.1
  [1986cc42] + Unitful v1.21.0
  [45397f5d] + UnitfulLatexify v1.6.4
  [41fe7b60] + Unzip v0.2.0
  [cc8bc4a8] + Widgets v0.6.6
  [efce3f68] + WoodburyMatrices v1.0.0
⌅ [68821587] + Arpack_jll v3.5.1+1
  [83423d85] + Cairo_jll v1.18.0+2
  [ee1fde0b] + Dbus_jll v1.14.10+0
  [2702e6a9] + EpollShim_jll v0.0.20230411+0
  [2e619515] + Expat_jll v2.6.2+0
  [b22a6f82] + FFMPEG_jll v6.1.2+0
  [f5851436] + FFTW_jll v3.3.10+0
  [a3f928ae] + Fontconfig_jll v2.13.96+0
  [d7e528f0] + FreeType2_jll v2.13.2+0
  [559328eb] + FriBidi_jll v1.0.14+0
  [0656b61e] + GLFW_jll v3.4.0+1
  [d2c73de3] + GR_jll v0.73.7+0
  [78b55507] + Gettext_jll v0.21.0+0
  [7746bdde] + Glib_jll v2.80.2+0
  [3b182d85] + Graphite2_jll v1.3.14+0
  [2e76f6c2] + HarfBuzz_jll v8.3.1+0
  [1d5cc7b8] + IntelOpenMP_jll v2024.2.1+0
  [aacddb02] + JpegTurbo_jll v3.0.3+0
  [c1c5ebd0] + LAME_jll v3.100.2+0
⌅ [88015f11] + LERC_jll v3.0.0+1
  [1d63c593] + LLVMOpenMP_jll v17.0.6+0
  [dd4b983a] + LZO_jll v2.10.2+0
⌅ [e9f186c6] + Libffi_jll v3.2.2+1
  [d4300ac3] + Libgcrypt_jll v1.8.11+0
  [7e76a0d4] + Libglvnd_jll v1.6.0+0
  [7add5ba3] + Libgpg_error_jll v1.49.0+0
  [94ce4f54] + Libiconv_jll v1.17.0+0
  [4b2f31a3] + Libmount_jll v2.40.1+0
⌅ [89763e89] + Libtiff_jll v4.5.1+1
  [38a345b3] + Libuuid_jll v2.40.1+0
  [856f044c] + MKL_jll v2024.2.0+0
  [e7412a2a] + Ogg_jll v1.3.5+1
  [458c3c95] + OpenSSL_jll v3.0.14+0
  [91d4177d] + Opus_jll v1.3.3+0
  [36c8627f] + Pango_jll v1.54.1+0
  [30392449] + Pixman_jll v0.43.4+0
  [c0090381] + Qt6Base_jll v6.7.1+1
  [629bc702] + Qt6Declarative_jll v6.7.1+2
  [ce943373] + Qt6ShaderTools_jll v6.7.1+1
  [e99dba38] + Qt6Wayland_jll v6.7.1+1
⌅ [f50d1b31] + Rmath_jll v0.4.3+0
  [a44049a8] + Vulkan_Loader_jll v1.3.243+0
  [a2964d1f] + Wayland_jll v1.21.0+1
  [2381bf8a] + Wayland_protocols_jll v1.31.0+0
  [02c8fc9c] + XML2_jll v2.13.3+0
  [aed1982a] + XSLT_jll v1.1.41+0
  [ffd25f8a] + XZ_jll v5.4.6+0
  [f67eecfb] + Xorg_libICE_jll v1.1.1+0
  [c834827a] + Xorg_libSM_jll v1.2.4+0
  [4f6342f7] + Xorg_libX11_jll v1.8.6+0
  [0c0b7dd1] + Xorg_libXau_jll v1.0.11+0
  [935fb764] + Xorg_libXcursor_jll v1.2.0+4
  [a3789734] + Xorg_libXdmcp_jll v1.1.4+0
  [1082639a] + Xorg_libXext_jll v1.3.6+0
  [d091e8ba] + Xorg_libXfixes_jll v5.0.3+4
  [a51aa0fd] + Xorg_libXi_jll v1.7.10+4
  [d1454406] + Xorg_libXinerama_jll v1.1.4+4
  [ec84b674] + Xorg_libXrandr_jll v1.5.2+4
  [ea2f1a96] + Xorg_libXrender_jll v0.9.11+0
  [14d82f49] + Xorg_libpthread_stubs_jll v0.1.1+0
  [c7cfdc94] + Xorg_libxcb_jll v1.17.0+0
  [cc61e674] + Xorg_libxkbfile_jll v1.1.2+0
  [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.4+0
  [12413925] + Xorg_xcb_util_image_jll v0.4.0+1
  [2def613f] + Xorg_xcb_util_jll v0.4.0+1
  [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.0+1
  [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.9+1
  [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.1+1
  [35661453] + Xorg_xkbcomp_jll v1.4.6+0
  [33bec58e] + Xorg_xkeyboard_config_jll v2.39.0+0
  [c5fb5394] + Xorg_xtrans_jll v1.5.0+0
  [3161d3a3] + Zstd_jll v1.5.6+0
  [35ca27e7] + eudev_jll v3.2.9+0
  [214eeab7] + fzf_jll v0.53.0+0
  [1a1c6b14] + gperf_jll v3.1.1+0
  [a4ae2306] + libaom_jll v3.9.0+0
  [0ac62f75] + libass_jll v0.15.2+0
  [1183f4f0] + libdecor_jll v0.2.2+0
  [2db6ffa8] + libevdev_jll v1.11.0+0
  [f638f0a6] + libfdk_aac_jll v2.0.3+0
  [36db933b] + libinput_jll v1.18.0+0
  [b53b4c65] + libpng_jll v1.6.43+1
  [f27f6e37] + libvorbis_jll v1.3.7+2
  [009596ad] + mtdev_jll v1.1.6+0
  [1317d2d5] + oneTBB_jll v2021.12.0+0
  [1270edf5] + x264_jll v10164.0.0+0
  [dfaa095f] + x265_jll v3.6.0+0
  [d8fb68d0] + xkbcommon_jll v1.4.1+1
  [8ba89e20] + Distributed
  [4af54fe1] + LazyArtifacts
  [1a1011a3] + SharedArrays
  [4607b0f0] + SuiteSparse
  [efcefdf7] + PCRE2_jll v10.42.0+1
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
Precompiling project...
  ✗ BinaryProvider
  ✗ FFMPEG
  ✗ Plots
  ✗ Plots → UnitfulExt
  0 dependencies successfully precompiled in 16 seconds. 229 already precompiled.

So it errors.

(jl_htRAci) pkg> status --outdated -m
Status `C:\Users\metivier\AppData\Local\Temp\jl_htRAci\Manifest.toml`
⌃ [c87230d0] FFMPEG v0.2.4 (<v0.4.1)
⌃ [91a5bcdd] Plots v1.40.1 (<v1.40.8)
⌅ [68821587] Arpack_jll v3.5.1+1 (<v3.9.1+1): Arpack
⌅ [88015f11] LERC_jll v3.0.0+1 (<v4.0.0+0): Libtiff_jll
⌅ [e9f186c6] Libffi_jll v3.2.2+1 (<v3.4.6+0): Glib_jll, HarfBuzz_jll, Wayland_jll
⌅ [89763e89] Libtiff_jll v4.5.1+1 (<v4.6.0+0): GR_jll
⌅ [f50d1b31] Rmath_jll v0.4.3+0 (<v0.5.0+0): Rmath

When I update, the new versions does not error by downgrading some packages and upgrading other

(jl_htRAci) pkg> up
    Updating registry at `C:\Users\metivier\.julia\registries\dev_pkg`
    Updating git-repo `https://github.com/dmetivie/LocalRegistry`
    Updating registry at `C:\Users\metivier\.julia\registries\General.toml`
  No Changes to `C:\Users\metivier\AppData\Local\Temp\jl_htRAci\Project.toml`
    Updating `C:\Users\metivier\AppData\Local\Temp\jl_htRAci\Manifest.toml`
  [b99e7846] - BinaryProvider v0.5.10
  [c87230d0] ↑ FFMPEG v0.2.4 ⇒ v0.4.1
  [91a5bcdd] ↑ Plots v1.40.1 ⇒ v1.40.8
⌅ [b22a6f82] ↓ FFMPEG_jll v6.1.2+0 ⇒ v4.4.4+1
⌅ [1270edf5] ↓ x264_jll v10164.0.0+0 ⇒ v2021.5.5+0
⌅ [dfaa095f] ↓ x265_jll v3.6.0+0 ⇒ v3.5.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Is this a Julia pkg manager bug or a JuMP (or StatsPlots) bug?