Hi,
I get the following error when I tried to load MLDatasets package. A similar error occurs when trying to load HDF5 package as well !
I am using a mac with an m1 chip, perhaps this may the reason.
I have also tried deleting the ~.julia folder and reinstalling Julia, but this error seems to persist.
Any ideas what can be done?
using MLDatasets
[ Info: Precompiling MLDatasets [eb30cadb-4394-5ae3-aed4-317e484a6458]
ERROR: LoadError: UndefVarError: libhdf5 not defined
Stacktrace:
[1] top-level scope
@ ~/.julia/packages/HDF5/pIJra/src/api_types.jl:119
[2] include(mod::Module, _path::String)
@ Base ./Base.jl:418
[3] include(x::String)
@ HDF5 ~/.julia/packages/HDF5/pIJra/src/HDF5.jl:1
[4] top-level scope
@ ~/.julia/packages/HDF5/pIJra/src/HDF5.jl:51
[5] include
@ ./Base.jl:418 [inlined]
[6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
@ Base ./loading.jl:1318
[7] top-level scope
@ none:1
[8] eval
@ ./boot.jl:373 [inlined]
[9] eval(x::Expr)
@ Base.MainInclude ./client.jl:453
[10] top-level scope
@ none:1
in expression starting at /Users/imantha/.julia/packages/HDF5/pIJra/src/api_types.jl:119
in expression starting at /Users/imantha/.julia/packages/HDF5/pIJra/src/HDF5.jl:1
ERROR: LoadError: Failed to precompile HDF5 [f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f] to /Users/imantha/.julia/compiled/v1.7/HDF5/jl_bM0ZhZ.
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, ignore_loaded_modules::Bool)
@ Base ./loading.jl:1466
[3] compilecache(pkg::Base.PkgId, path::String)
@ Base ./loading.jl:1410
[4] _require(pkg::Base.PkgId)
@ Base ./loading.jl:1120
[5] require(uuidkey::Base.PkgId)
@ Base ./loading.jl:1013
[6] require(into::Module, mod::Symbol)
@ Base ./loading.jl:997
[7] include
@ ./Base.jl:418 [inlined]
[8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
@ Base ./loading.jl:1318
[9] top-level scope
@ none:1
[10] eval
@ ./boot.jl:373 [inlined]
[11] eval(x::Expr)
@ Base.MainInclude ./client.jl:453
[12] top-level scope
@ none:1
in expression starting at /Users/imantha/.julia/packages/MAT/zayWb/src/MAT.jl:25
ERROR: LoadError: Failed to precompile MAT [23992714-dd62-5051-b70f-ba57cb901cac] to /Users/imantha/.julia/compiled/v1.7/MAT/jl_m22SYh.
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, ignore_loaded_modules::Bool)
@ Base ./loading.jl:1466
[3] compilecache(pkg::Base.PkgId, path::String)
@ Base ./loading.jl:1410
[4] _require(pkg::Base.PkgId)
@ Base ./loading.jl:1120
[5] require(uuidkey::Base.PkgId)
@ Base ./loading.jl:1013
[6] require(into::Module, mod::Symbol)
@ Base ./loading.jl:997
[7] include(mod::Module, _path::String)
@ Base ./Base.jl:418
[8] include(x::String)
@ MLDatasets ~/.julia/packages/MLDatasets/pFFKQ/src/MLDatasets.jl:1
[9] top-level scope
@ ~/.julia/packages/MLDatasets/pFFKQ/src/MLDatasets.jl:50
[10] include
@ ./Base.jl:418 [inlined]
[11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
@ Base ./loading.jl:1318
[12] top-level scope
@ none:1
[13] eval
@ ./boot.jl:373 [inlined]
[14] eval(x::Expr)
@ Base.MainInclude ./client.jl:453
[15] top-level scope
@ none:1
in expression starting at /Users/imantha/.julia/packages/MLDatasets/pFFKQ/src/SVHN2/SVHN2.jl:3
in expression starting at /Users/imantha/.julia/packages/MLDatasets/pFFKQ/src/MLDatasets.jl:1
ERROR: LoadError: Failed to precompile MLDatasets [eb30cadb-4394-5ae3-aed4-317e484a6458] to /Users/imantha/.julia/compiled/v1.7/MLDatasets/jl_59WrVD.
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, ignore_loaded_modules::Bool)
@ Base ./loading.jl:1466
[3] compilecache(pkg::Base.PkgId, path::String)
@ Base ./loading.jl:1410
[4] _require(pkg::Base.PkgId)
@ Base ./loading.jl:1120
[5] require(uuidkey::Base.PkgId)
@ Base ./loading.jl:1013
[6] require(into::Module, mod::Symbol)
@ Base ./loading.jl:997
[7] eval
@ ./boot.jl:373 [inlined]
[8] include_string(mapexpr::typeof(REPL.softscope), mod::Module, code::String, filename::String)
@ Base ./loading.jl:1196
[9] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base ./essentials.jl:716
[10] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base ./essentials.jl:714
[11] inlineeval(m::Module, code::String, code_line::Int64, code_column::Int64, file::String; softscope::Bool)
@ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.5.8/scripts/packages/VSCodeServer/src/eval.jl:211
[12] (::VSCodeServer.var"#60#64"{Bool, Bool, Module, String, Int64, Int64, String, VSCodeServer.ReplRunCodeRequestParams})()
@ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.5.8/scripts/packages/VSCodeServer/src/eval.jl:155
[13] withpath(f::VSCodeServer.var"#60#64"{Bool, Bool, Module, String, Int64, Int64, String, VSCodeServer.ReplRunCodeRequestParams}, path::String)
@ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.5.8/scripts/packages/VSCodeServer/src/repl.jl:185
[14] (::VSCodeServer.var"#59#63"{Bool, Bool, Bool, Module, String, Int64, Int64, String, VSCodeServer.ReplRunCodeRequestParams})()
@ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.5.8/scripts/packages/VSCodeServer/src/eval.jl:153
[15] hideprompt(f::VSCodeServer.var"#59#63"{Bool, Bool, Bool, Module, String, Int64, Int64, String, VSCodeServer.ReplRunCodeRequestParams})
@ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.5.8/scripts/packages/VSCodeServer/src/repl.jl:36
[16] (::VSCodeServer.var"#58#62"{Bool, Bool, Bool, Module, String, Int64, Int64, String, VSCodeServer.ReplRunCodeRequestParams})()
@ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.5.8/scripts/packages/VSCodeServer/src/eval.jl:124
[17] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:511
[18] with_logger
@ ./logging.jl:623 [inlined]
[19] (::VSCodeServer.var"#57#61"{VSCodeServer.ReplRunCodeRequestParams})()
@ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.5.8/scripts/packages/VSCodeServer/src/eval.jl:201
[20] #invokelatest#2
@ ./essentials.jl:716 [inlined]
[21] invokelatest(::Any)
@ Base ./essentials.jl:714
[22] macro expansion
@ ~/.vscode/extensions/julialang.language-julia-1.5.8/scripts/packages/VSCodeServer/src/eval.jl:34 [inlined]
[23] (::VSCodeServer.var"#55#56")()
@ VSCodeServer ./task.jl:423
in expression starting at /Users/imantha/workspace/julia/tutorials/flux/simple_MLP.jl:6