Create PDF document with PGFPlotsX figures, captions, a table, and some text

Some kind of docker setup might make sense then. That is what we use for the tests for PGFPlotsX (Continuous integration for Julia packages using Docker, GitHub - tpapp/texlive-julia-minimal-docker: minimal docker setup for texlive and Julia)

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So I ended up doing what @dawbarton and @Tamas_Papp recommended. I get the best of both worlds, PGFPlots generated via Julia with PGFPlotsX, tables with LaTeXTabulars, all in a LaTeX document.

It works really well. Thanks for all the help!

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You should try to document this process somehow, maybe a blog or something. This whole thread is very interesting and I need to also explore this ideas.

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