Hi,
Trying to read in the Smith et al 2004 model Minimal haemodynamic system model including ventricular interaction and valve dynamics. — Physiome Model Repository
using the code
ml = CellModel("/home/harry/Desktop/PhD/Year 1/Sem 2/CellML project/smith_chase_nokes_shaw_wake_2004/smith_chase_nokes_shaw_wake_2004-f7b732c9707a/smith_chase_nokes_shaw_wake_2004.cellml")
prob = ODEProblem(ml, (0.0,5000.0))
sol = solve(prob, CVODE_BDF(), dtmax = 0.5)
Returns the following error
ERROR: MethodError: no method matching operation(::Float64)
Closest candidates are:
operation(::SymbolicUtils.Code.MakeSparseArray) at ~/.julia/packages/Metatheory/XcKKW/src/utils.jl:154
operation(::Symbolics.CallWithMetadata) at ~/.julia/packages/Symbolics/hgePJ/src/variable.jl:202
operation(::Symbolics.ComplexTerm{T}) where T at ~/.julia/packages/Symbolics/hgePJ/src/complex.jl:22
...
Stacktrace:
[1] (::CellMLToolkit.var"#24#26")(eq::Equation)
@ CellMLToolkit ./none:0
[2] iterate
@ ./iterators.jl:447 [inlined]
[3] iterate
@ ./generator.jl:44 [inlined]
[4] grow_to!(dest::Vector{Any}, itr::Base.Generator{Base.Iterators.Filter{CellMLToolkit.var"#24#26", Vector{Equation}}, CellMLToolkit.var"#23#25"})
@ Base ./array.jl:797
[5] collect
@ ./array.jl:721 [inlined]
[6] remove_rhs_diff(eqs::Vector{Equation})
@ CellMLToolkit ~/.julia/packages/CellMLToolkit/Pnsff/src/components.jl:191
[7] process_component(doc::CellMLToolkit.Document, comp::CellMLToolkit.Component, class::Dict{CellMLToolkit.Var, Bool})
@ CellMLToolkit ~/.julia/packages/CellMLToolkit/Pnsff/src/components.jl:269
[8] #32
@ ./none:0 [inlined]
[9] iterate
@ ./generator.jl:47 [inlined]
[10] Dict{Symbol, ODESystem}(kv::Base.Generator{Vector{CellMLToolkit.Component}, CellMLToolkit.var"#32#33"{CellMLToolkit.Document, Dict{CellMLToolkit.Var, Bool}}})
@ Base ./dict.jl:104
[11] subsystems(doc::CellMLToolkit.Document, class::Dict{CellMLToolkit.Var, Bool})
@ CellMLToolkit ~/.julia/packages/CellMLToolkit/Pnsff/src/components.jl:248
[12] process_components(doc::CellMLToolkit.Document; simplify::Bool)
@ CellMLToolkit ~/.julia/packages/CellMLToolkit/Pnsff/src/components.jl:224
[13] process_components
@ ~/.julia/packages/CellMLToolkit/Pnsff/src/components.jl:220 [inlined]
[14] CellModel(path::String)
@ CellMLToolkit ~/.julia/packages/CellMLToolkit/Pnsff/src/CellMLToolkit.jl:36
[15] top-level scope
@ ~/Desktop/PhD/Year 1/Sem 2/CellML project/Cell_ML.jl:77
Not sure if this is a CellML error or a Julia one if so I will try to correct the CellML file
Cheers 