Artifact: Zstd and artifact: MbedTLS installation failure when adding packages MAT and IJulia respectively

dunky-star · May 23, 2020, 11:21am

PyPlot get installed very well but MAT and IJulia are failed. Any idea?

julia> versioninfo()
Julia Version 1.4.1
Commit 381693d3df* (2020-04-14 17:20 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) CPU L5408 @ 2.13GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, penryn)
Environment:
JULIA_HOME = /home/hadoop/opt/julia-1.4.1/

(@v1.4) pkg> add PyPlot
Updating registry at ~/.julia/registries/General
Updating git-repo https://github.com/JuliaRegistries/General.git
Resolving package versions…
Updating ~/.julia/environments/v1.4/Project.toml
[no changes]
Updating ~/.julia/environments/v1.4/Manifest.toml
[no changes]

(@v1.4) pkg> add IJulia
Resolving package versions…
Downloading artifact: MbedTLS
######################################################################## 100.0%-=O#-# # # curl: (28) Failed to connect to github-production-release-asset-2e65be.s3.amazonaws.com port 443: Connection timed out
ERROR: Unable to automatically install ‘MbedTLS’ from ‘/home/hadoop/.julia/packages/MbedTLS_jll/hP8le/Artifacts.toml’
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] ensure_artifact_installed(::String, ::Dict{String,Any}, ::String; platform::Pkg.BinaryPlatforms.Platform, verbose::Bool, quiet_download::Bool) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/Pkg/src/Artifacts.jl:894
[3] ensure_all_artifacts_installed(::String; platform::Pkg.BinaryPlatforms.Platform, pkg_uuid::Nothing, include_lazy::Bool, verbose::Bool, quiet_download::Bool) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/Pkg/src/Artifacts.jl:958
[4] download_artifacts(::Pkg.Types.Context, ::Array{String,1}; platform::Pkg.BinaryPlatforms.Linux, verbose::Bool) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:609
[5] download_artifacts(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; platform::Pkg.BinaryPlatforms.Linux, verbose::Bool) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:588
[6] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Array{Base.UUID,1}; preserve::Pkg.Types.PreserveLevel, platform::Pkg.BinaryPlatforms.Linux) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1084
[7] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; preserve::Pkg.Types.PreserveLevel, platform::Pkg.BinaryPlatforms.Linux, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:159
[8] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:112
[9] #add#27 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:109 [inlined]
[10] add(::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:109
[11] do_cmd!(::Pkg.REPLMode.Command, ::REPL.LineEditREPL) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/Pkg/src/REPLMode/REPLMode.jl:403
[12] do_cmd(::REPL.LineEditREPL, ::String; do_rethrow::Bool) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/Pkg/src/REPLMode/REPLMode.jl:381
[13] do_cmd at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/Pkg/src/REPLMode/REPLMode.jl:376 [inlined]
[14] (::Pkg.REPLMode.var"#24#27"{REPL.LineEditREPL,REPL.LineEdit.Prompt})(::REPL.LineEdit.MIState, ::Base.GenericIOBuffer{Array{UInt8,1}}, ::Bool) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/Pkg/src/REPLMode/REPLMode.jl:542
[15] #invokelatest#1 at ./essentials.jl:712 [inlined]
[16] invokelatest at ./essentials.jl:711 [inlined]
[17] run_interface(::REPL.Terminals.TextTerminal, ::REPL.LineEdit.ModalInterface, ::REPL.LineEdit.MIState) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/REPL/src/LineEdit.jl:2354
[18] run_frontend(::REPL.LineEditREPL, ::REPL.REPLBackendRef) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/REPL/src/REPL.jl:1055
[19] run_repl(::REPL.AbstractREPL, ::Any) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.4/REPL/src/REPL.jl:206
[20] (::Base.var"#764#766"{Bool,Bool,Bool,Bool})(::Module) at ./client.jl:383
[21] #invokelatest#1 at ./essentials.jl:712 [inlined]
[22] invokelatest at ./essentials.jl:711 [inlined]
[23] run_main_repl(::Bool, ::Bool, ::Bool, ::Bool, ::Bool) at ./client.jl:367
[24] exec_options(::Base.JLOptions) at ./client.jl:305
[25] _start() at ./client.jl:484

(@v1.4) pkg>

giordano · May 23, 2020, 11:32am

It looks like a GitHub issue to me. Try again?

dunky-star · May 23, 2020, 6:15pm

Thanks Giordano.

Note that for now it has refused. I have been trying since yesterday and so disappointing due to unreliability issues.

giordano · May 23, 2020, 6:23pm

Since you have Julia 1.4 you can try using the PkgServer, which lets you not go through GitHub. Set the following environment variable and restart Julia:

JULIA_PKG_SERVER=https://geo.pkg.julialang.org

dunky-star · May 25, 2020, 3:08pm

Finally jubilation! I can now update packages after updating .profile with JULIA_PKG_SERVER as below in Ubuntu. Thanks a lot [giordano] for the belp.

JULIA_PKG_SERVER=“https://geo.pkg.julialang.org”
export JULIA_PKG_SERVER

Result

Julia Version 1.4.1
Commit 381693d3df* (2020-04-14 17:20 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) CPU L5408 @ 2.13GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, penryn)
Environment:
JULIA_PKG_SERVER = https://geo.pkg.julialang.org
JULIA_HOME = /home/hadoop/opt/julia/

(@v1.4) pkg> add IJulia
Cloning default registries into ~/.julia
######################################################################## 100.0%
Added registry General to ~/.julia/registries/General
Resolving package versions…
Installed SoftGlobalScope ─ v1.0.10
Installed ZMQ ───────────── v1.2.0
Installed Parsers ───────── v1.0.4
Installed MbedTLS_jll ───── v2.16.0+2
Installed VersionParsing ── v1.2.0
Installed MbedTLS ───────── v1.0.2
Installed IJulia ────────── v1.21.2
Installed Conda ─────────── v1.4.1
Installed ZeroMQ_jll ────── v4.3.2+3
Installed JSON ──────────── v0.21.0
Downloading artifact: MbedTLS
Downloading artifact: ZeroMQ
Updating ~/.julia/environments/v1.4/Project.toml
[7073ff75] + IJulia v1.21.2
Updating ~/.julia/environments/v1.4/Manifest.toml
[8f4d0f93] + Conda v1.4.1
[7073ff75] + IJulia v1.21.2
[682c06a0] + JSON v0.21.0
[739be429] + MbedTLS v1.0.2
[c8ffd9c3] + MbedTLS_jll v2.16.0+2
[69de0a69] + Parsers v1.0.4
[b85f4697] + SoftGlobalScope v1.0.10
[81def892] + VersionParsing v1.2.0
[c2297ded] + ZMQ v1.2.0
[8f1865be] + ZeroMQ_jll v4.3.2+3
[2a0f44e3] + Base64

~

Zehra112 · October 12, 2020, 7:50am

Hİ dunky-star, I have the same problem as yours, but I am using windows 10.
So the only thing you did is, you wrote on Julia: JULIA_PKG_SERVER=“https://geo.pkg.julialang.org 6”
export JULIA_PKG_SERVER

And after, ]add IJulia ???

I am making the same thing but still getting the same error? Can you help me please how did you fix you issue

dunky-star · October 13, 2020, 6:58am

Hi, Zehar112
I am using Linux (Ubuntu), it works after restarting Julia when below two lines are added to .profile file. I am not sure though which file to modify on Windows as I rarely use Windows.

JULIA_PKG_SERVER=“https://geo.pkg.julialang.org”
export JULIA_PKG_SERVER

NB: On Windows though, the best is to install Julia by Chocolately so that it helps with PATH management and offloads most of the manual configuration tasks from you.