Until yesterday the updates of Julia 1.6.1 ran fine !!!
But nevertheless I can add packages …
This has nothing to do with Julia. Julia wants to download https://github.com/JuliaBinaryWrappers/libpng_jll.jl/releases/download/libpng-v1.6.38+0/libpng.v1.6.38.x86_64-w64-mingw32.tar.gz. If you go there with the web browser you can see it is blocked (by your “firewall”). This block has to be fixed in order for you to be able to download the file.
If you add packages/artifacts that are not blocked by your firewall, those will work. No one here can possibly know what files have been blocked on your network.
1 Like
If @HerAdri was previously successfully using the pkg server to acquire all artifacts and that isn’t working now for some reason, there are a few reasons this could happen:
- The default Pkg behavior changed
- The user changed
JULIA_PKG_SERVERsetting - This is a new artifact that the pkg servers don’t have yet
The first thing shouldn’t have happened in a point release. The second presumably didn’t happen or @HerAdri would have mentioned it. That leaves the third thing, which is likely because there was a large influx of huge artifacts over the weekend which has caused delays in pkg servers processing and serving artifacts. They should be caught up soon, at which point this would stop happening since the artifact would be accessible from the pkg server, which presumably is accessible since things were working previously.
5 Likes
I think this is true,
using Pkg
server = Pkg.pkg_server()
hash = "72037f1415327f12277eed0521c861517630a0ba"
url = "$server/artifact/$hash"
download(url, "libpng_jll.tar.gz")
ERROR: HTTP/1.1 404 Not Found while requesting https://pkg.julialang.org/artifact/72037f1415327f12277eed0521c861517630a0ba
So indeed, if the package server is accessible then things should work after the package server updates. It seems this artifact was updated 3 days ago so the server must be quite backed up.
1 Like
Yeah, there was an influx of a good portion of a terabyte of artifacts all at once. And a bunch of them have broken tarball checksums so ingesting them keeps failing and retrying periodically. This has been taxing the storage servers in new and interesting ways that @staticfloat is working on making them more resilient to, but it’s hard to anticipate all the ways that things can go wrong on the internet.
7 Likes
I might add that if you use JuliaHub’s package servers (pkg.juliahub.com), they don’t advertise registry updates until they’ve processed all the artifacts, which means there’s a lag between when something appears in the registry and when you’ll be able to install it, which is why we don’t do this for the open source pkg servers. That might be a better choice of package server if you are behind a firewall that blocks access to GitHub. You will need to log into JuliaHub and get an auth token because the server is authenticated.
2 Likes
What’s particularly bad about this firewall’s behavior is that it doesn’t even give a 401 or 404 response, so the client just thinks the download was successful and the content was bad instead of being able to show a sane error about the request failing. I guess you can complain about that to the sysadmin.
5 Likes
Test the last pkg dropped, two days ago
(@v1.6) pkg> test NLsolve
Testing NLsolve
Status `C:\Users\Hermesr\AppData\Local\Temp\jl_NwYcSc\Project.toml`
[2b5f629d] DiffEqBase v6.62.1
[b4f34e82] Distances v0.10.3
[42fd0dbc] IterativeSolvers v0.9.1
[d3d80556] LineSearches v7.1.1
[d41bc354] NLSolversBase v7.8.0
[2774e3e8] NLsolve v4.5.1
[189a3867] Reexport v1.0.0
[37e2e46d] LinearAlgebra `@stdlib/LinearAlgebra`
[de0858da] Printf `@stdlib/Printf`
[9a3f8284] Random `@stdlib/Random`
[2f01184e] SparseArrays `@stdlib/SparseArrays`
[8dfed614] Test `@stdlib/Test`
Status `C:\Users\Hermesr\AppData\Local\Temp\jl_NwYcSc\Manifest.toml`
[79e6a3ab] Adapt v3.3.0
[4fba245c] ArrayInterface v2.14.17
[d360d2e6] ChainRulesCore v0.9.44
[38540f10] CommonSolve v0.2.0
[bbf7d656] CommonSubexpressions v0.3.0
[34da2185] Compat v3.30.0
[187b0558] ConstructionBase v1.2.1
[9a962f9c] DataAPI v1.6.0
[864edb3b] DataStructures v0.18.9
[e2d170a0] DataValueInterfaces v1.0.0
[2b5f629d] DiffEqBase v6.62.1
[163ba53b] DiffResults v1.0.3
[b552c78f] DiffRules v1.0.2
[b4f34e82] Distances v0.10.3
[ffbed154] DocStringExtensions v0.8.4
[7034ab61] FastBroadcast v0.1.8
[6a86dc24] FiniteDiff v2.8.0
[f6369f11] ForwardDiff v0.10.18
[069b7b12] FunctionWrappers v1.1.2
[0e44f5e4] Hwloc v1.3.0
[615f187c] IfElse v0.1.0
[42fd0dbc] IterativeSolvers v0.9.1
[82899510] IteratorInterfaceExtensions v1.0.0
[692b3bcd] JLLWrappers v1.3.0
[2ee39098] LabelledArrays v1.6.1
[d3d80556] LineSearches v7.1.1
[2ab3a3ac] LogExpFunctions v0.2.4
[bdcacae8] LoopVectorization v0.10.0
[1914dd2f] MacroTools v0.5.6
[46d2c3a1] MuladdMacro v0.2.2
[d41bc354] NLSolversBase v7.8.0
[2774e3e8] NLsolve v4.5.1
[77ba4419] NaNMath v0.3.5
[8913a72c] NonlinearSolve v0.3.8
[6fe1bfb0] OffsetArrays v1.8.0
[bac558e1] OrderedCollections v1.4.1
[d96e819e] Parameters v0.12.2
[21216c6a] Preferences v1.2.2
[3cdcf5f2] RecipesBase v1.1.1
[731186ca] RecursiveArrayTools v2.11.4
[f2c3362d] RecursiveFactorization v0.1.12
[189a3867] Reexport v1.0.0
[ae029012] Requires v1.1.3
[476501e8] SLEEFPirates v0.6.8
[0bca4576] SciMLBase v1.13.3
[efcf1570] Setfield v0.7.0
[276daf66] SpecialFunctions v1.4.1
[90137ffa] StaticArrays v1.2.0
[82ae8749] StatsAPI v1.0.0
[3783bdb8] TableTraits v1.0.1
[bd369af6] Tables v1.4.2
[8290d209] ThreadingUtilities v0.2.3
[a2a6695c] TreeViews v0.3.0
[3a884ed6] UnPack v1.0.2
[3d5dd08c] VectorizationBase v0.16.2
[700de1a5] ZygoteRules v0.2.1
[e33a78d0] Hwloc_jll v2.4.1+0
[efe28fd5] OpenSpecFun_jll v0.5.4+0
[0dad84c5] ArgTools `@stdlib/ArgTools`
[56f22d72] Artifacts `@stdlib/Artifacts`
[2a0f44e3] Base64 `@stdlib/Base64`
[ade2ca70] Dates `@stdlib/Dates`
[8bb1440f] DelimitedFiles `@stdlib/DelimitedFiles`
[8ba89e20] Distributed `@stdlib/Distributed`
[f43a241f] Downloads `@stdlib/Downloads`
[9fa8497b] Future `@stdlib/Future`
[b77e0a4c] InteractiveUtils `@stdlib/InteractiveUtils`
[b27032c2] LibCURL `@stdlib/LibCURL`
[76f85450] LibGit2 `@stdlib/LibGit2`
[8f399da3] Libdl `@stdlib/Libdl`
[37e2e46d] LinearAlgebra `@stdlib/LinearAlgebra`
[56ddb016] Logging `@stdlib/Logging`
[d6f4376e] Markdown `@stdlib/Markdown`
[a63ad114] Mmap `@stdlib/Mmap`
[ca575930] NetworkOptions `@stdlib/NetworkOptions`
[44cfe95a] Pkg `@stdlib/Pkg`
[de0858da] Printf `@stdlib/Printf`
[3fa0cd96] REPL `@stdlib/REPL`
[9a3f8284] Random `@stdlib/Random`
[ea8e919c] SHA `@stdlib/SHA`
[9e88b42a] Serialization `@stdlib/Serialization`
[1a1011a3] SharedArrays `@stdlib/SharedArrays`
[6462fe0b] Sockets `@stdlib/Sockets`
[2f01184e] SparseArrays `@stdlib/SparseArrays`
[10745b16] Statistics `@stdlib/Statistics`
[4607b0f0] SuiteSparse `@stdlib/SuiteSparse`
[fa267f1f] TOML `@stdlib/TOML`
[a4e569a6] Tar `@stdlib/Tar`
[8dfed614] Test `@stdlib/Test`
[cf7118a7] UUIDs `@stdlib/UUIDs`
[4ec0a83e] Unicode `@stdlib/Unicode`
[e66e0078] CompilerSupportLibraries_jll `@stdlib/CompilerSupportLibraries_jll`
[deac9b47] LibCURL_jll `@stdlib/LibCURL_jll`
[29816b5a] LibSSH2_jll `@stdlib/LibSSH2_jll`
[c8ffd9c3] MbedTLS_jll `@stdlib/MbedTLS_jll`
[14a3606d] MozillaCACerts_jll `@stdlib/MozillaCACerts_jll`
[83775a58] Zlib_jll `@stdlib/Zlib_jll`
[8e850ede] nghttp2_jll `@stdlib/nghttp2_jll`
[3f19e933] p7zip_jll `@stdlib/p7zip_jll`
Testing Running tests...
Running tests:
Test Summary: | Pass Total
2by2 | 23 23
Test Summary: | Pass Total
linsolve | 3 3
Function Dim NFEV NJEV Final inf-norm total time
--------------------------------------------------------------------------------------
Rosenbrock-trust_region 2 30 17 1.310063e-13 1.746681e-01
Rosenbrock-trust_region-AD 2 30 17 0.000000e+00 1.746681e-01
Rosenbrock-newton 2 3 3 2.479350e-10 2.726300e-05
Rosenbrock-newton-AD 2 3 3 8.881784e-15 2.726300e-05
Rosenbrock-broyden 2 697 0 1.038196e-09 4.541344e-03
Powell singular-trust_region 4 17 17 2.945101e-09 8.904455e-02
Powell singular-trust_region-AD 4 17 17 2.945101e-09 8.904455e-02
Powell singular-newton 4 17 17 2.945101e-09 5.163900e-05
Powell singular-newton-AD 4 17 17 2.945101e-09 5.163900e-05
Powell badly scaled-trust_region 2 15 14 7.051693e-12 8.804128e-02
Powell badly scaled-trust_region-AD 2 15 14 7.051582e-12 8.804128e-02
Powell badly scaled-newton 2 13 13 1.573319e-11 5.196000e-05
Powell badly scaled-newton-AD 2 13 13 1.573341e-11 5.196000e-05
Powell badly scaled-broyden 2 1283 0 7.095169e-10 3.791140e-04
Wood-trust_region 4 19 15 1.152257e-10 9.091349e-02
Wood-trust_region-AD 4 19 15 1.152340e-10 9.091349e-02
Wood-newton 4 15 15 4.241052e-14 5.484700e-05
Wood-newton-AD 4 15 15 4.884981e-14 5.484700e-05
Helical Valley-trust_region 3 10 9 1.110223e-14 1.474826e-01
Helical Valley-trust_region-AD 3 10 9 1.110223e-14 1.474826e-01
Helical Valley-newton 3 11 11 1.146398e-14 6.094000e-05
Helical Valley-newton-AD 3 11 11 1.145685e-14 6.094000e-05
Helical Valley-broyden 3 94 0 1.555335e-09 6.799600e-05
Watson-trust_region 6 18 16 2.879728e-13 1.136414e-01
Watson-trust_region-AD 6 18 16 2.940460e-13 1.136414e-01
Watson-newton 6 13 13 3.192030e-13 1.847460e-04
Watson-newton-AD 6 13 13 3.107306e-13 1.847460e-04
Watson-trust_region 9 17 17 1.599700e-12 4.644300e-04
Watson-trust_region-AD 9 17 17 1.610837e-12 4.644300e-04
Watson-newton 9 14 14 7.178719e-15 3.617940e-04
Watson-newton-AD 9 14 14 1.418956e-14 3.617940e-04
Chebyquad-trust_region 5 6 5 9.143921e-09 1.005071e-01
Chebyquad-trust_region-AD 5 6 5 9.143861e-09 1.005071e-01
Chebyquad-broyden 5 544 0 2.387715e-09 2.363850e-04
Chebyquad-trust_region 6 12 8 8.049117e-16 9.526000e-05
Chebyquad-trust_region-AD 6 12 8 7.320533e-16 9.526000e-05
Chebyquad-broyden 6 531 0 4.589862e-09 2.421580e-04
Chebyquad-trust_region 7 8 6 6.328884e-10 8.114700e-05
Chebyquad-trust_region-AD 7 8 6 6.329061e-10 8.114700e-05
Chebyquad-broyden 7 482 0 1.632946e-10 2.152160e-04
Chebyquad-trust_region 9 13 8 1.638967e-14 1.167490e-04
Chebyquad-trust_region-AD 9 13 8 1.636538e-14 1.167490e-04
Chebyquad-broyden 9 844 0 9.680938e-09 4.390920e-04
Brown almost-linear-trust_region 10 5 5 3.382331e-09 1.400055e-01
Brown almost-linear-trust_region-AD 10 5 5 3.382330e-09 1.400055e-01
Brown almost-linear-broyden 10 41 0 8.740535e-10 8.018400e-05
Brown almost-linear-trust_region 30 4 4 8.883189e-09 2.607930e-03
Brown almost-linear-trust_region-AD 30 4 4 8.883264e-09 2.607930e-03
Brown almost-linear-broyden 30 45 0 5.158425e-09 1.751230e-04
Brown almost-linear-trust_region 40 2 2 7.242570e-10 1.054045e-02
Brown almost-linear-trust_region-AD 40 4 4 1.570839e-09 1.054045e-02
Brown almost-linear-broyden 40 64 0 2.491596e-10 3.913020e-04
Discrete boundary value-trust_region 10 4 4 2.636780e-16 9.316861e-02
Discrete boundary value-trust_region-AD 10 4 4 2.636780e-16 9.316861e-02
Discrete boundary value-newton 10 4 4 2.636780e-16 3.880900e-05
Discrete boundary value-newton-AD 10 4 4 2.636780e-16 3.880900e-05
Discrete boundary value-broyden 10 334 0 4.344250e-09 2.495350e-04
Discrete integral equation-trust_region 1 4 4 8.537615e-14 9.893486e-02
Discrete integral equation-trust_region-AD 1 4 4 8.537615e-14 9.893486e-02
Discrete integral equation-newton 1 4 4 8.537615e-14 3.816800e-05
Discrete integral equation-newton-AD 1 4 4 8.537615e-14 3.816800e-05
Discrete integral equation-broyden 1 5 0 4.608538e-10 2.918700e-05
Discrete integral equation-trust_region 10 4 4 2.720046e-15 7.761900e-05
Discrete integral equation-trust_region-AD 10 4 4 2.747802e-15 7.761900e-05
Discrete integral equation-newton 10 4 4 2.720046e-15 5.645000e-05
Discrete integral equation-newton-AD 10 4 4 2.747802e-15 5.645000e-05
Discrete integral equation-broyden 10 6 0 4.266497e-09 5.292200e-05
Trigonometric-trust_region 10 14 8 1.204281e-10 9.784787e-02
Trigonometric-trust_region-AD 10 14 8 1.204299e-10 9.784787e-02
Variably dimensioned-trust_region 10 15 15 2.868483e-12 9.286102e-02
Variably dimensioned-trust_region-AD 10 15 15 1.323497e-12 9.286102e-02
Variably dimensioned-newton 10 15 15 2.868483e-12 8.724100e-05
Variably dimensioned-newton-AD 10 15 15 1.323497e-12 8.724100e-05
Variably dimensioned-broyden 10 1804 0 0.000000e+00 1.040478e-03
Broyden tridiagonal-trust_region 10 5 5 7.548397e-10 1.153057e-01
Broyden tridiagonal-trust_region-AD 10 5 5 7.548402e-10 1.153057e-01
Broyden tridiagonal-newton 10 5 5 7.548397e-10 4.041300e-05
Broyden tridiagonal-newton-AD 10 5 5 7.548402e-10 4.041300e-05
Broyden tridiagonal-broyden 10 229 0 7.176069e-09 1.581250e-04
Broyden banded-trust_region 10 6 6 9.359472e-09 9.724232e-02
Broyden banded-trust_region-AD 10 6 6 9.359466e-09 9.724232e-02
Broyden banded-newton 10 6 6 9.359472e-09 5.612900e-05
Broyden banded-newton-AD 10 6 6 9.359466e-09 5.612900e-05
Broyden banded-broyden 10 171 0 9.799625e-09 1.494640e-04
Test Summary: | Pass Total
minpack | 84 84
Test Summary: | Pass Broken Total
singular case | 6 2 8
Test Summary: | Pass Total
finite_difference | 1 1
Iter f(x) inf-norm Step 2-norm
------ -------------- --------------
1 1.494000e-01 NaN
2 1.403961e-01 1.971344e-06
3 2.416811e-02 6.187459e-08
4 2.207036e-02 5.105990e-08
5 1.221892e-03 1.542135e-10
6 1.597480e-03 2.635656e-10
7 3.048944e-07 9.296098e-18
8 1.620505e-08 2.629202e-20
9 8.668621e-13 7.519430e-29
WARNING: Method definition f!(Any, Any) in module Main at C:\Users\Hermesr\.julia\packages\NLsolve\gJL1I\test\iface.jl:7 overwritten at C:\Users\Hermesr\.julia\packages\NLsolve\gJL1I\test\iface.jl:146.
WARNING: Method definition j!(Any, Any) in module Main at C:\Users\Hermesr\.julia\packages\NLsolve\gJL1I\test\iface.jl:12 overwritten at C:\Users\Hermesr\.julia\packages\NLsolve\gJL1I\test\iface.jl:151.
Test Summary: | Pass Total
iface | 12 12
Test Summary: | Pass Total
incomplete objective | 2 2
Test Summary: | Pass Total
already converged | 6 6
Test Summary: | Pass Total
autodiff | 2 2
Test Summary: | Pass Total
mcp_josephy | 18 18
Test Summary: |
difficult_mcp | No tests
Test Summary: | Pass Total
sparse | 10 10
Test Summary: | Pass Total
throws | 4 4
Test Summary: | Pass Total
f_g_counts | 4 4
Test Summary: | Pass Total
no linesearch | 1 1
Test Summary: | Pass Total
abstractarray | 32 32
Test Summary: | Pass Total
complex | 44 44
Test Summary: | Pass Total
caches | 3 3
Test Summary: | Pass Total
fixed points | 17 17
Testing NLsolve tests passed
(@v1.6) pkg>
But, today I can no longer add Packages
(@v1.6) pkg> add HypothesisTests
Resolving package versions...
Downloaded artifact: libpng
Downloading artifact: libpng
┌ Error: Hash Mismatch!
│ Expected sha256: 6c2666da0aa1d8075709982c776d773c51999b678d9ba839df27caf031c778df
│ Calculated sha256: 9822ff82fff7bdb758a7ebd966712aa16454a9774d97b5a60151355b0e01136a
└ @ Pkg.PlatformEngines C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\PlatformEngines.jl:61 Downloaded artifact: libpng
ERROR: Unable to automatically install 'libpng' from 'C:\Users\Hermesr\.julia\packages\libpng_jll\9vklf\Artifacts.toml'
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:33
[2] ensure_artifact_installed(name::String, meta::Dict{String, Any}, artifacts_toml::String; platform::Base.BinaryPlatforms.Platform, verbose::Bool, quiet_download::Bool, io::Base.TTY)
@ Pkg.Artifacts C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\Artifacts.jl:443
[3] ensure_all_artifacts_installed(artifacts_toml::String; platform::Base.BinaryPlatforms.Platform, pkg_uuid::Nothing, include_lazy::Bool, verbose::Bool, quiet_download::Bool, io::Base.TTY)
@ Pkg.Artifacts C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\Artifacts.jl:508
[4] download_artifacts(ctx::Pkg.Types.Context, pkg_roots::Vector{String}; platform::Base.BinaryPlatforms.Platform, verbose::Bool, io::Base.TTY)
@ Pkg.Operations C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\Operations.jl:706
[5] download_artifacts(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; platform::Base.BinaryPlatforms.Platform, julia_version::VersionNumber, verbose::Bool, io::Base.TTY)
@ Pkg.Operations C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\Operations.jl:683
[6] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Vector{Base.UUID}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform)
@ Pkg.Operations C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\Operations.jl:1237
[7] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, kwargs::Base.Iterators.Pairs{Symbol, Base.TTY, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.TTY}}})
@ Pkg.API C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\API.jl:203
[8] add(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.TTY, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\API.jl:79
[9] add(pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\API.jl:77
[10] do_cmd!(command::Pkg.REPLMode.Command, repl::REPL.LineEditREPL)
@ Pkg.REPLMode C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\REPLMode\REPLMode.jl:408
[11] do_cmd(repl::REPL.LineEditREPL, input::String; do_rethrow::Bool)
@ Pkg.REPLMode C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\REPLMode\REPLMode.jl:386
[12] do_cmd
@ C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\REPLMode\REPLMode.jl:377 [inlined]
[13] (::Pkg.REPLMode.var"#24#27"{REPL.LineEditREPL, REPL.LineEdit.Prompt})(s::REPL.LineEdit.MIState, buf::IOBuffer, ok::Bool)
@ Pkg.REPLMode C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\REPLMode\REPLMode.jl:550
[14] #invokelatest#2
@ .\essentials.jl:708 [inlined]
[15] invokelatest
@ .\essentials.jl:706 [inlined]
[16] run_interface(terminal::REPL.Terminals.TextTerminal, m::REPL.LineEdit.ModalInterface, s::REPL.LineEdit.MIState)
@ REPL.LineEdit C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\REPL\src\LineEdit.jl:2441
[17] run_frontend(repl::REPL.LineEditREPL, backend::REPL.REPLBackendRef)
@ REPL C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\REPL\src\REPL.jl:1126
[18] (::REPL.var"#44#49"{REPL.LineEditREPL, REPL.REPLBackendRef})()
@ REPL .\task.jl:411
(@v1.6) pkg>
Julia 1.5.4 works correctly:
(@v1.5) pkg> add DifferentialEquations, DifferentialEvolutionMCMC
Resolving package versions...
Installed SuiteSparse_jll ─ v5.4.0+9
Installed METIS_jll ─────── v5.1.0+5
Installed OpenBLAS_jll ──── v0.3.9+5
Updating `C:\Users\Hermesr\.julia\environments\v1.5\Project.toml`
[0c46a032] + DifferentialEquations v6.17.1
[607db5a9] + DifferentialEvolutionMCMC v0.5.4
Updating `C:\Users\Hermesr\.julia\environments\v1.5\Manifest.toml`
[c3fe647b] + AbstractAlgebra v0.16.0
[80f14c24] + AbstractMCMC v3.2.0
[1520ce14] + AbstractTrees v0.3.4
[0bf59076] + AdvancedHMC v0.2.27
[dce04be8] + ArgCheck v2.1.0
[ec485272] + ArnoldiMethod v0.1.0
[198e06fe] + BangBang v0.3.30
[9718e550] + Baselet v0.1.1
[76274a88] + Bijectors v0.9.2
[764a87c0] + BoundaryValueDiffEq v2.7.1
[a33af91c] + CompositionsBase v0.1.0
[88cd18e8] + ConsoleProgressMonitor v0.1.2
[244e2a9f] + DefineSingletons v0.1.1
[bcd4f6db] + DelayDiffEq v5.31.1
[2b5f629d] + DiffEqBase v6.62.2
[459566f4] + DiffEqCallbacks v2.16.1
[5a0ffddc] + DiffEqFinancial v2.4.0
[c894b116] + DiffEqJump v6.14.2
[77a26b50] + DiffEqNoiseProcess v5.7.3
[055956cb] + DiffEqPhysics v3.9.0
[0c46a032] + DifferentialEquations v6.17.1
[607db5a9] + DifferentialEvolutionMCMC v0.5.4
[c619ae07] + DimensionalPlotRecipes v1.2.0
[d4d017d3] + ExponentialUtilities v1.8.4
[7034ab61] + FastBroadcast v0.1.8
[9aa1b823] + FastClosures v0.3.2
[069b7b12] + FunctionWrappers v1.1.2
[d9f16b24] + Functors v0.2.1
[0e44f5e4] + Hwloc v2.0.0
[e33a78d0] + Hwloc_jll v2.4.1+0
[d25df0c9] + Inflate v0.1.2
[22cec73e] + InitialValues v0.2.10
[505f98c9] + InplaceOps v0.3.0
[42fd0dbc] + IterativeSolvers v0.9.1
[2ee39098] + LabelledArrays v1.6.1
[1d6d02ad] + LeftChildRightSiblingTrees v0.1.2
[093fc24a] + LightGraphs v1.3.5
[d3d80556] + LineSearches v7.1.1
[e6f89c97] + LoggingExtras v0.4.6
[bdcacae8] + LoopVectorization v0.12.24
[c7f686f2] + MCMCChains v4.12.0
[d00139f3] + METIS_jll v5.1.0+5
[e80e1ace] + MLJModelInterface v1.1.0
[128add7d] + MicroCollections v0.1.0
[961ee093] + ModelingToolkit v5.16.0
[46d2c3a1] + MuladdMacro v0.2.2
[f9640e96] + MultiScaleArrays v1.8.1
[2774e3e8] + NLsolve v4.5.1
[872c559c] + NNlib v0.7.19
[c020b1a1] + NaturalSort v1.0.0
[8913a72c] + NonlinearSolve v0.3.8
[4536629a] + OpenBLAS_jll v0.3.9+5
[429524aa] + Optim v1.3.0
[1dea7af3] + OrdinaryDiffEq v5.56.0
[65888b18] + ParameterizedFunctions v5.10.0
[e409e4f3] + PoissonRandom v0.4.0
[f517fe37] + Polyester v0.3.1
[85a6dd25] + PositiveFactorizations v0.2.4
[33c8b6b6] + ProgressLogging v0.1.4
[92933f4c] + ProgressMeter v1.6.2
[74087812] + Random123 v1.3.1
[fb686558] + RandomExtensions v0.4.3
[e6cf234a] + RandomNumbers v1.4.0
[731186ca] + RecursiveArrayTools v2.11.4
[f2c3362d] + RecursiveFactorization v0.1.12
[ae5879a3] + ResettableStacks v1.1.0
[7e49a35a] + RuntimeGeneratedFunctions v0.5.2
[476501e8] + SLEEFPirates v0.6.20
[1bc83da4] + SafeTestsets v0.0.1
[0bca4576] + SciMLBase v1.13.4
[321657f4] + ScientificTypes v1.1.2
[0e71a2a6] + SequentialSamplingModels v0.1.4
[efcf1570] + Setfield v0.7.0
[47a9eef4] + SparseDiffTools v1.13.2
[171d559e] + SplittablesBase v0.1.13
[64bff920] + StatisticalTraits v1.1.0
[9672c7b4] + SteadyStateDiffEq v1.6.2
[789caeaf] + StochasticDiffEq v6.34.1
[7792a7ef] + StrideArraysCore v0.1.11
[bea87d4a] + SuiteSparse_jll v5.4.0+9
[c3572dad] + Sundials v4.4.3
[fb77eaff] + Sundials_jll v5.2.0+1
[d1185830] + SymbolicUtils v0.11.2
[0c5d862f] + Symbolics v0.1.25
[5d786b92] + TerminalLoggers v0.1.3
[8290d209] + ThreadingUtilities v0.4.4
[a759f4b9] + TimerOutputs v0.5.9
[28d57a85] + Transducers v0.4.65
[a2a6695c] + TreeViews v0.3.0
[3d5dd08c] + VectorizationBase v0.20.11
[19fa3120] + VertexSafeGraphs v0.1.2
[700de1a5] + ZygoteRules v0.2.1
(@v1.5) pkg> test DifferentialEquations
Testing DifferentialEquations
Status `C:\Users\Hermesr\AppData\Local\Temp\jl_qQPBME\Project.toml`
[764a87c0] BoundaryValueDiffEq v2.7.1
[bcd4f6db] DelayDiffEq v5.31.1
[2b5f629d] DiffEqBase v6.62.2
[459566f4] DiffEqCallbacks v2.16.1
[5a0ffddc] DiffEqFinancial v2.4.0
[c894b116] DiffEqJump v6.14.2
[77a26b50] DiffEqNoiseProcess v5.7.3
[055956cb] DiffEqPhysics v3.9.0
[0c46a032] DifferentialEquations v6.17.1
[c619ae07] DimensionalPlotRecipes v1.2.0
[f9640e96] MultiScaleArrays v1.8.1
[1dea7af3] OrdinaryDiffEq v5.56.0
[65888b18] ParameterizedFunctions v5.10.0
[731186ca] RecursiveArrayTools v2.11.4
[189a3867] Reexport v0.2.0
[1bc83da4] SafeTestsets v0.0.1
[9672c7b4] SteadyStateDiffEq v1.6.2
[789caeaf] StochasticDiffEq v6.34.1
[c3572dad] Sundials v4.4.3
[37e2e46d] LinearAlgebra
[9a3f8284] Random
[8dfed614] Test
Status `C:\Users\Hermesr\AppData\Local\Temp\jl_qQPBME\Manifest.toml`
[c3fe647b] AbstractAlgebra v0.16.0
[1520ce14] AbstractTrees v0.3.4
[79e6a3ab] Adapt v3.3.0
[ec485272] ArnoldiMethod v0.1.0
[4fba245c] ArrayInterface v3.1.15
[4c555306] ArrayLayouts v0.7.0
[56f22d72] Artifacts v1.3.0
[aae01518] BandedMatrices v0.16.9
[764a87c0] BoundaryValueDiffEq v2.7.1
[fa961155] CEnum v0.4.1
[d360d2e6] ChainRulesCore v0.9.44
[861a8166] Combinatorics v1.0.2
[38540f10] CommonSolve v0.2.0
[bbf7d656] CommonSubexpressions v0.3.0
[34da2185] Compat v3.30.0
[e66e0078] CompilerSupportLibraries_jll v0.3.4+0
[187b0558] ConstructionBase v1.2.1
[9a962f9c] DataAPI v1.6.0
[864edb3b] DataStructures v0.18.9
[e2d170a0] DataValueInterfaces v1.0.0
[bcd4f6db] DelayDiffEq v5.31.1
[2b5f629d] DiffEqBase v6.62.2
[459566f4] DiffEqCallbacks v2.16.1
[5a0ffddc] DiffEqFinancial v2.4.0
[c894b116] DiffEqJump v6.14.2
[77a26b50] DiffEqNoiseProcess v5.7.3
[055956cb] DiffEqPhysics v3.9.0
[163ba53b] DiffResults v1.0.3
[b552c78f] DiffRules v1.0.2
[0c46a032] DifferentialEquations v6.17.1
[c619ae07] DimensionalPlotRecipes v1.2.0
[b4f34e82] Distances v0.10.3
[31c24e10] Distributions v0.24.18
[ffbed154] DocStringExtensions v0.8.4
[d4d017d3] ExponentialUtilities v1.8.4
[e2ba6199] ExprTools v0.1.3
[7034ab61] FastBroadcast v0.1.8
[9aa1b823] FastClosures v0.3.2
[1a297f60] FillArrays v0.11.7
[6a86dc24] FiniteDiff v2.8.0
[59287772] Formatting v0.4.2
[f6369f11] ForwardDiff v0.10.18
[069b7b12] FunctionWrappers v1.1.2
[0e44f5e4] Hwloc v2.0.0
[e33a78d0] Hwloc_jll v2.4.1+0
[615f187c] IfElse v0.1.0
[d25df0c9] Inflate v0.1.2
[42fd0dbc] IterativeSolvers v0.9.1
[82899510] IteratorInterfaceExtensions v1.0.0
[692b3bcd] JLLWrappers v1.3.0
[b964fa9f] LaTeXStrings v1.2.1
[2ee39098] LabelledArrays v1.6.1
[23fbe1c1] Latexify v0.15.5
[093fc24a] LightGraphs v1.3.5
[d3d80556] LineSearches v7.1.1
[2ab3a3ac] LogExpFunctions v0.2.4
[bdcacae8] LoopVectorization v0.12.24
[d00139f3] METIS_jll v5.1.0+5
[1914dd2f] MacroTools v0.5.6
[e1d29d7a] Missings v1.0.0
[961ee093] ModelingToolkit v5.16.0
[46d2c3a1] MuladdMacro v0.2.2
[f9640e96] MultiScaleArrays v1.8.1
[d41bc354] NLSolversBase v7.8.0
[2774e3e8] NLsolve v4.5.1
[77ba4419] NaNMath v0.3.5
[8913a72c] NonlinearSolve v0.3.8
[6fe1bfb0] OffsetArrays v1.9.0
[4536629a] OpenBLAS_jll v0.3.9+5
[efe28fd5] OpenSpecFun_jll v0.5.3+4
[429524aa] Optim v1.3.0
[bac558e1] OrderedCollections v1.4.1
[1dea7af3] OrdinaryDiffEq v5.56.0
[90014a1f] PDMats v0.11.0
[65888b18] ParameterizedFunctions v5.10.0
[d96e819e] Parameters v0.12.2
[e409e4f3] PoissonRandom v0.4.0
[f517fe37] Polyester v0.3.1
[85a6dd25] PositiveFactorizations v0.2.4
[21216c6a] Preferences v1.2.2
[1fd47b50] QuadGK v2.4.1
[74087812] Random123 v1.3.1
[fb686558] RandomExtensions v0.4.3
[e6cf234a] RandomNumbers v1.4.0
[3cdcf5f2] RecipesBase v1.1.1
[731186ca] RecursiveArrayTools v2.11.4
[f2c3362d] RecursiveFactorization v0.1.12
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.1.3
[ae5879a3] ResettableStacks v1.1.0
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+2
[7e49a35a] RuntimeGeneratedFunctions v0.5.2
[476501e8] SLEEFPirates v0.6.20
[1bc83da4] SafeTestsets v0.0.1
[0bca4576] SciMLBase v1.13.4
[efcf1570] Setfield v0.7.0
[699a6c99] SimpleTraits v0.9.3
[a2af1166] SortingAlgorithms v1.0.0
[47a9eef4] SparseDiffTools v1.13.2
[276daf66] SpecialFunctions v1.4.2
[aedffcd0] Static v0.2.4
[90137ffa] StaticArrays v1.2.1
[82ae8749] StatsAPI v1.0.0
[2913bbd2] StatsBase v0.33.8
[4c63d2b9] StatsFuns v0.9.8
[9672c7b4] SteadyStateDiffEq v1.6.2
[789caeaf] StochasticDiffEq v6.34.1
[7792a7ef] StrideArraysCore v0.1.11
[bea87d4a] SuiteSparse_jll v5.4.0+9
[c3572dad] Sundials v4.4.3
[fb77eaff] Sundials_jll v5.2.0+1
[d1185830] SymbolicUtils v0.11.2
[0c5d862f] Symbolics v0.1.25
[fa267f1f] TOML v1.0.3
[3783bdb8] TableTraits v1.0.1
[bd369af6] Tables v1.4.3
[8290d209] ThreadingUtilities v0.4.4
[a759f4b9] TimerOutputs v0.5.9
[a2a6695c] TreeViews v0.3.0
[3a884ed6] UnPack v1.0.2
[1986cc42] Unitful v1.7.0
[3d5dd08c] VectorizationBase v0.20.11
[19fa3120] VertexSafeGraphs v0.1.2
[700de1a5] ZygoteRules v0.2.1
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Test Summary: | Pass Total
Default Discrete Algorithm | 1 1
5.756733 seconds (16.22 M allocations: 842.202 MiB, 4.76% gc time)
Test Summary: | Pass Total
Default ODE Algorithm | 21 21
144.317717 seconds (241.70 M allocations: 11.905 GiB, 3.24% gc time)
Test Summary: | Pass Total
Default Steady State Algorithm | 1 1
5.012243 seconds (8.67 M allocations: 432.833 MiB, 2.47% gc time)
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ SciMLBase C:\Users\Hermesr\.julia\packages\SciMLBase\grNUR\src\integrator_interface.jl:345
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ SciMLBase C:\Users\Hermesr\.julia\packages\SciMLBase\grNUR\src\integrator_interface.jl:345
Test Summary: | Pass Total
Default SDE Algorithm | 8 8
115.065704 seconds (233.00 M allocations: 77.585 GiB, 9.52% gc time)
Test Summary: | Pass Total
Default RODE Algorithm | 1 1
20.536422 seconds (42.25 M allocations: 15.997 GiB, 10.88% gc time)
Test Summary: | Pass Total
Default DDE Algorithm | 3 3
5.655007 seconds (13.43 M allocations: 817.006 MiB, 3.86% gc time)
Test Summary: | Pass Total
Default DAE Algorithm | 1 1
3.737443 seconds (9.26 M allocations: 492.821 MiB, 4.88% gc time)
Test Summary: | Pass Total
Default BVP Algorithm | 2 2
9.562223 seconds (18.22 M allocations: 986.320 MiB, 3.05% gc time)
309.815719 seconds (583.63 M allocations: 109.015 GiB, 6.12% gc time)
Testing DifferentialEquations tests passed
(@v1.5) pkg>
And in R, everything runs fine: adding an updating packages
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> install.packages(c("fansi", "RcppArmadillo"))
There are binary versions available but the source versions are later:
binary source needs_compilation
fansi 0.4.2 0.5.0 TRUE
RcppArmadillo 0.10.4.0.0 0.10.5.0.0 TRUE
installing the source packages ‘fansi’, ‘RcppArmadillo’
trying URL 'https://cran.rstudio.com/src/contrib/fansi_0.5.0.tar.gz'
Content type 'application/x-gzip' length 301724 bytes (294 KB)
downloaded 294 KB
trying URL 'https://cran.rstudio.com/src/contrib/RcppArmadillo_0.10.5.0.0.tar.gz'
Content type 'application/x-gzip' length 1669395 bytes (1.6 MB)
downloaded 1.6 MB
* installing *source* package 'fansi' ...
** package 'fansi' successfully unpacked and MD5 sums checked
** using staged installation
** libs
*** arch - i386
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c assumptions.c -o assumptions.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c has.c -o has.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c nchar.c -o nchar.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c read.c -o read.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rnchar.c -o rnchar.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c state.c -o state.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c strip.c -o strip.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c strsplit.c -o strsplit.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c tabs.c -o tabs.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c tohtml.c -o tohtml.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c unhandled.c -o unhandled.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c unique.c -o unique.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utf8.c -o utf8.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o
utils.c: In function 'FANSI_find_esc':
utils.c:193:47: warning: 'x_found_end' may be used uninitialized in this function [-Wmaybe-uninitialized]
.start=x_found_start, .len=(x_found_end - x_found_start),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
utils.c:193:47: warning: 'x_found_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wrap.c -o wrap.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o fansi.dll tmp.def assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -LC:/Users/Hermesr/DOCUME~1/R/R-40~1.5/bin/i386 -lR
installing to C:/Users/Hermesr/Documents/R/R-4.0.5/library/00LOCK-fansi/00new/fansi/libs/i386
*** arch - x64
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c assumptions.c -o assumptions.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c has.c -o has.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c nchar.c -o nchar.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c read.c -o read.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rnchar.c -o rnchar.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c state.c -o state.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c strip.c -o strip.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c strsplit.c -o strsplit.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c tabs.c -o tabs.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c tohtml.c -o tohtml.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c unhandled.c -o unhandled.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c unique.c -o unique.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utf8.c -o utf8.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o
utils.c: In function 'FANSI_find_esc':
utils.c:193:47: warning: 'x_found_end' may be used uninitialized in this function [-Wmaybe-uninitialized]
.start=x_found_start, .len=(x_found_end - x_found_start),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
utils.c:193:47: warning: 'x_found_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wrap.c -o wrap.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o fansi.dll tmp.def assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -LC:/Users/Hermesr/DOCUME~1/R/R-40~1.5/bin/x64 -lR
installing to C:/Users/Hermesr/Documents/R/R-4.0.5/library/00LOCK-fansi/00new/fansi/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'fansi'
finding HTML links ... done
fansi html
fansi_lines html
has_ctl html
html_code_block html
html_esc html
in_html html
make_styles html
nchar_ctl html
set_knit_hooks html
sgr_256 html
sgr_to_html html
strip_ctl html
strsplit_ctl html
Rd warning: C:/Users/Hermesr/AppData/Local/Temp/Rtmpq2RBYu/R.INSTALL14586098f83/fansi/man/strsplit_ctl.Rd:35: file link 'regular expression' in package 'base' does not exist and so has been treated as a topic
strtrim_ctl html
Rd warning: C:/Users/Hermesr/AppData/Local/Temp/Rtmpq2RBYu/R.INSTALL14586098f83/fansi/man/strtrim_ctl.Rd:33: file link 'as.character' in package 'base' does not exist and so has been treated as a topic
strwrap_ctl html
Rd warning: C:/Users/Hermesr/AppData/Local/Temp/Rtmpq2RBYu/R.INSTALL14586098f83/fansi/man/strwrap_ctl.Rd:72: file link 'as.character' in package 'base' does not exist and so has been treated as a topic
substr_ctl html
tabs_as_spaces html
term_cap_test html
unhandled_ctl html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
*** arch - i386
*** arch - x64
** testing if installed package can be loaded from final location
*** arch - i386
*** arch - x64
** testing if installed package keeps a record of temporary installation path
* DONE (fansi)
* installing *source* package 'RcppArmadillo' ...
** package 'RcppArmadillo' successfully unpacked and MD5 sums checked
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
*** arch - i386
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -I'C:/Users/Hermesr/Documents/R/R-4.0.5/library/Rcpp/include' -I../inst/include -I. -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppArmadillo.cpp -o RcppArmadillo.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -I'C:/Users/Hermesr/Documents/R/R-4.0.5/library/Rcpp/include' -I../inst/include -I. -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -I'C:/Users/Hermesr/Documents/R/R-4.0.5/library/Rcpp/include' -I../inst/include -I. -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fastLm.cpp -o fastLm.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o RcppArmadillo.dll tmp.def RcppArmadillo.o RcppExports.o fastLm.o -fopenmp -LC:/Users/Hermesr/DOCUME~1/R/R-40~1.5/bin/i386 -lRlapack -LC:/Users/Hermesr/DOCUME~1/R/R-40~1.5/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/Users/Hermesr/DOCUME~1/R/R-40~1.5/bin/i386 -lR
installing to C:/Users/Hermesr/Documents/R/R-4.0.5/library/00LOCK-RcppArmadillo/00new/RcppArmadillo/libs/i386
*** arch - x64
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -I'C:/Users/Hermesr/Documents/R/R-4.0.5/library/Rcpp/include' -I../inst/include -I. -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppArmadillo.cpp -o RcppArmadillo.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -I'C:/Users/Hermesr/Documents/R/R-4.0.5/library/Rcpp/include' -I../inst/include -I. -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/Hermesr/DOCUME~1/R/R-40~1.5/include" -DNDEBUG -I'C:/Users/Hermesr/Documents/R/R-4.0.5/library/Rcpp/include' -I../inst/include -I. -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fastLm.cpp -o fastLm.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o RcppArmadillo.dll tmp.def RcppArmadillo.o RcppExports.o fastLm.o -fopenmp -LC:/Users/Hermesr/DOCUME~1/R/R-40~1.5/bin/x64 -lRlapack -LC:/Users/Hermesr/DOCUME~1/R/R-40~1.5/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/Users/Hermesr/DOCUME~1/R/R-40~1.5/bin/x64 -lR
installing to C:/Users/Hermesr/Documents/R/R-4.0.5/library/00LOCK-RcppArmadillo/00new/RcppArmadillo/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RcppArmadillo'
finding HTML links ... done
RcppArmadillo-package html
RcppArmadillo.package.skeleton html
armadillo_set_seed html
armadillo_set_seed_random html
armadillo_version html
fastLm html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
*** arch - i386
*** arch - x64
** testing if installed package can be loaded from final location
*** arch - i386
*** arch - x64
** testing if installed package keeps a record of temporary installation path
* DONE (RcppArmadillo)
The downloaded source packages are in
‘C:\Users\Hermesr\AppData\Local\Temp\RtmpIbmAt4\downloaded_packages’
>
The question now is if you find one specific package that you can download in 1.5 but not in 1.6. (You are installing HypothesisTests in 1.6 and DifferentialEquations in 1.5). Can you try adding HypothesisTests in Julia v1.5?
If the same package fails in both 1.6 and 1.5 then you just need to wait a couple of days until the servers are up to date.
If I understand correctly, as Stefan explained, currently the libpng package is available on an address that your company is blocking. In a few days when the other servers catch up, you should be able to get it, because it will come from the usual server that was working for you. So it is NOT a generalized problem, that is why some packages are succesfully installed. It is a problem with some specific packages that should solve itself soon.
I did suggest a solution, ie using pkg.JuliaHub.com instead.
1 Like
I adding HypothesisTests in Julia v1.5.4
How to insert the username and password in these lines?
set http_proxy=....
set https_proxy=...
You can often use a URL that looks like this: https://user:password@domain/path.
Thanks for the various explanations and discussion on this issue. I want to work with my IT to adjust the firewall and I’m trying to narrow down the exact cause. If I click the URL you listed, the download begins and appears to be successful, so I’m not sure if this is the same issue I am experiencing. Is there any additional insight based on this?