# \#sbml

**URL:** https://discourse.julialang.org/tag/sbml/593.md

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## [Problem constructing reaction system from SBML Biomodel](https://discourse.julialang.org/t/problem-constructing-reaction-system-from-sbml-biomodel/116548)

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**Author:** [@jchitpin](https://discourse.julialang.org/u/jchitpin)\
**Replies:** 2\
**Last updated:** [July 3, 2024, 1:16pm UTC](https://discourse.julialang.org/t/problem-constructing-reaction-system-from-sbml-biomodel/116548 "2024-07-03T13:16:12Z")

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I am encountering difficulties loading an SBML file from BioModels (see here). Following the SBMLToolKit instructions, I loaded the SBML file but am having issues constructing the reaction system with warnings that certa…

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## [Problem with simulating SBML Model](https://discourse.julialang.org/t/problem-with-simulating-sbml-model/110942)

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**Author:** [@max-de-rooij](https://discourse.julialang.org/u/max-de-rooij)\
**Replies:** 4\
**Last updated:** [March 7, 2024, 12:10pm UTC](https://discourse.julialang.org/t/problem-with-simulating-sbml-model/110942 "2024-03-07T12:10:38Z")

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I am trying to solve an ODE problem from a downloaded SBML file, but I seem to get an error. I used to be able to run this file (although I do not remember the specific versions of each package I used before). My code i…

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## [SBMLToolkit and Catalyst Warnings](https://discourse.julialang.org/t/sbmltoolkit-and-catalyst-warnings/107533)

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**Author:** [@Nick1](https://discourse.julialang.org/u/Nick1)\
**Replies:** 3\
**Last updated:** [January 29, 2024, 10:14pm UTC](https://discourse.julialang.org/t/sbmltoolkit-and-catalyst-warnings/107533 "2024-01-29T22:14:12Z")

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I am importing an SBML file without a problem but I got the following warnings: Warning: Stoichiometries of SpeciesReferences are not defined. Setting to 1. WARNING: both Symbolics and ModelingToolkit export “suprem…

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## [Error with remake function in ODE Problems](https://discourse.julialang.org/t/error-with-remake-function-in-ode-problems/103902)

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**Author:** [@Nick1](https://discourse.julialang.org/u/Nick1)\
**Replies:** 0\
**Last updated:** [September 15, 2023, 3:19pm UTC](https://discourse.julialang.org/t/error-with-remake-function-in-ode-problems/103902 "2023-09-15T15:19:20Z")

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Hi everyone, I am importing an SBML file and try to change the initial condition and remake the problem but I get the following error: ERROR: ArgumentError: This problem does not support symbolic maps with remake, i.e.…

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## [Best way to export Catalyst models to SBML format](https://discourse.julialang.org/t/best-way-to-export-catalyst-models-to-sbml-format/75951)

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**Author:** [@Polina](https://discourse.julialang.org/u/Polina)\
**Replies:** 2\
**Last updated:** [February 7, 2022, 2:16pm UTC](https://discourse.julialang.org/t/best-way-to-export-catalyst-models-to-sbml-format/75951 "2022-02-07T14:16:59Z")

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Hello! I know it is possible to import SBML to Catalyst ReactionSystem using https://github.com/SciML/SBMLToolkit.jl However, I’m having troubles to find out what is the best way to export Catalyst models to SBML forma…

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## [SBML parser](https://discourse.julialang.org/t/sbml-parser/54915)

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**Author:** [@Elmo](https://discourse.julialang.org/u/Elmo)\
**Replies:** 4\
**Last updated:** [June 16, 2021, 7:04am UTC](https://discourse.julialang.org/t/sbml-parser/54915 "2021-06-16T07:04:21Z")

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Is anyone actively working on an SBML parser? I saw this and this but can’t find any status updates. I am busy building a Julia version of Cobrapy (much more expansive than COBRA.jl, which seems to be restricted to distr…