Julia server keeps crashing in vscode after I added MKL.jl

jishnub
Thu, 16 Sep 2021 12:48:29 +0000
Tooling

I keep receiving this error:

fatal: error thrown and no exception handler available.
InitError(mod=:IntelOpenMP_jll, error=ErrorException("Artifact "IntelOpenMP" was not installed correctly. Try `using Pkg; Pkg.instantiate()` to re-install all missing resources."))
error at ./error.jl:33
_artifact_str at /home/jishnu/Downloads/julia/julia-1.6.2/share/julia/stdlib/v1.6/Artifacts/src/Artifacts.jl:551
jfptr__artifact_str_54275 at /home/jishnu/Downloads/julia/julia-1.6.2/lib/julia/sys.so (unknown line)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
jl_f__call_latest at /buildworker/worker/package_linux64/build/src/builtins.c:714
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
do_apply at /buildworker/worker/package_linux64/build/src/builtins.c:670
#invokelatest#2 at ./essentials.jl:708
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
do_apply at /buildworker/worker/package_linux64/build/src/builtins.c:670
invokelatest at ./essentials.jl:706
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
do_call at /buildworker/worker/package_linux64/build/src/interpreter.c:115
eval_value at /buildworker/worker/package_linux64/build/src/interpreter.c:204
eval_stmt_value at /buildworker/worker/package_linux64/build/src/interpreter.c:155 [inlined]
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:562
jl_fptr_interpret_call at /buildworker/worker/package_linux64/build/src/interpreter.c:650
macro expansion at /home/jishnu/Downloads/julia/julia-1.6.2/share/julia/stdlib/v1.6/Artifacts/src/Artifacts.jl:680 [inlined]
find_artifact_dir at /home/jishnu/.julia/packages/JLLWrappers/bkwIo/src/wrapper_generators.jl:15
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
__init__ at /home/jishnu/.julia/packages/IntelOpenMP_jll/TUm6w/src/wrappers/x86_64-linux-gnu.jl:7
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
jl_module_run_initializer at /buildworker/worker/package_linux64/build/src/toplevel.c:72
_julia_init at /buildworker/worker/package_linux64/build/src/init.c:794
repl_entrypoint at /buildworker/worker/package_linux64/build/src/jlapi.c:696
main at /buildworker/worker/package_linux64/build/cli/loader_exe.c:51
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
_start at /home/jishnu/Downloads/julia/julia-1.6.2/bin/julia (unknown line)
[Info  - 4:42:14 pm] Connection to server got closed. Server will restart.
fatal: error thrown and no exception handler available.
InitError(mod=:IntelOpenMP_jll, error=ErrorException("Artifact "IntelOpenMP" was not installed correctly. Try `using Pkg; Pkg.instantiate()` to re-install all missing resources."))
error at ./error.jl:33
_artifact_str at /home/jishnu/Downloads/julia/julia-1.6.2/share/julia/stdlib/v1.6/Artifacts/src/Artifacts.jl:551
jfptr__artifact_str_54275 at /home/jishnu/Downloads/julia/julia-1.6.2/lib/julia/sys.so (unknown line)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
jl_f__call_latest at /buildworker/worker/package_linux64/build/src/builtins.c:714
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
do_apply at /buildworker/worker/package_linux64/build/src/builtins.c:670
#invokelatest#2 at ./essentials.jl:708
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
do_apply at /buildworker/worker/package_linux64/build/src/builtins.c:670
invokelatest at ./essentials.jl:706
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
do_call at /buildworker/worker/package_linux64/build/src/interpreter.c:115
eval_value at /buildworker/worker/package_linux64/build/src/interpreter.c:204
eval_stmt_value at /buildworker/worker/package_linux64/build/src/interpreter.c:155 [inlined]
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:562
jl_fptr_interpret_call at /buildworker/worker/package_linux64/build/src/interpreter.c:650
macro expansion at /home/jishnu/Downloads/julia/julia-1.6.2/share/julia/stdlib/v1.6/Artifacts/src/Artifacts.jl:680 [inlined]
find_artifact_dir at /home/jishnu/.julia/packages/JLLWrappers/bkwIo/src/wrapper_generators.jl:15
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
__init__ at /home/jishnu/.julia/packages/IntelOpenMP_jll/TUm6w/src/wrappers/x86_64-linux-gnu.jl:7
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
jl_module_run_initializer at /buildworker/worker/package_linux64/build/src/toplevel.c:72
_julia_init at /buildworker/worker/package_linux64/build/src/init.c:794
repl_entrypoint at /buildworker/worker/package_linux64/build/src/jlapi.c:696
main at /buildworker/worker/package_linux64/build/cli/loader_exe.c:51
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
_start at /home/jishnu/Downloads/julia/julia-1.6.2/bin/julia (unknown line)
[Info  - 4:42:14 pm] Connection to server got closed. Server will restart.
fatal: error thrown and no exception handler available.
InitError(mod=:IntelOpenMP_jll, error=ErrorException("Artifact "IntelOpenMP" was not installed correctly. Try `using Pkg; Pkg.instantiate()` to re-install all missing resources."))
error at ./error.jl:33
_artifact_str at /home/jishnu/Downloads/julia/julia-1.6.2/share/julia/stdlib/v1.6/Artifacts/src/Artifacts.jl:551
jfptr__artifact_str_54275 at /home/jishnu/Downloads/julia/julia-1.6.2/lib/julia/sys.so (unknown line)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
jl_f__call_latest at /buildworker/worker/package_linux64/build/src/builtins.c:714
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
do_apply at /buildworker/worker/package_linux64/build/src/builtins.c:670
#invokelatest#2 at ./essentials.jl:708
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
do_apply at /buildworker/worker/package_linux64/build/src/builtins.c:670
invokelatest at ./essentials.jl:706
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
do_call at /buildworker/worker/package_linux64/build/src/interpreter.c:115
eval_value at /buildworker/worker/package_linux64/build/src/interpreter.c:204
eval_stmt_value at /buildworker/worker/package_linux64/build/src/interpreter.c:155 [inlined]
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:562
jl_fptr_interpret_call at /buildworker/worker/package_linux64/build/src/interpreter.c:650
macro expansion at /home/jishnu/Downloads/julia/julia-1.6.2/share/julia/stdlib/v1.6/Artifacts/src/Artifacts.jl:680 [inlined]
find_artifact_dir at /home/jishnu/.julia/packages/JLLWrappers/bkwIo/src/wrapper_generators.jl:15
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
__init__ at /home/jishnu/.julia/packages/IntelOpenMP_jll/TUm6w/src/wrappers/x86_64-linux-gnu.jl:7
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
jl_module_run_initializer at /buildworker/worker/package_linux64/build/src/toplevel.c:72
_julia_init at /buildworker/worker/package_linux64/build/src/init.c:794
repl_entrypoint at /buildworker/worker/package_linux64/build/src/jlapi.c:696
main at /buildworker/worker/package_linux64/build/cli/loader_exe.c:51
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
_start at /home/jishnu/Downloads/julia/julia-1.6.2/bin/julia (unknown line)
[Info  - 4:42:15 pm] Connection to server got closed. Server will restart.
fatal: error thrown and no exception handler available.
InitError(mod=:IntelOpenMP_jll, error=ErrorException("Artifact "IntelOpenMP" was not installed correctly. Try `using Pkg; Pkg.instantiate()` to re-install all missing resources."))
error at ./error.jl:33
_artifact_str at /home/jishnu/Downloads/julia/julia-1.6.2/share/julia/stdlib/v1.6/Artifacts/src/Artifacts.jl:551
jfptr__artifact_str_54275 at /home/jishnu/Downloads/julia/julia-1.6.2/lib/julia/sys.so (unknown line)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
jl_f__call_latest at /buildworker/worker/package_linux64/build/src/builtins.c:714
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
do_apply at /buildworker/worker/package_linux64/build/src/builtins.c:670
#invokelatest#2 at ./essentials.jl:708
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
do_apply at /buildworker/worker/package_linux64/build/src/builtins.c:670
invokelatest at ./essentials.jl:706
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
do_call at /buildworker/worker/package_linux64/build/src/interpreter.c:115
eval_value at /buildworker/worker/package_linux64/build/src/interpreter.c:204
eval_stmt_value at /buildworker/worker/package_linux64/build/src/interpreter.c:155 [inlined]
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:562
jl_fptr_interpret_call at /buildworker/worker/package_linux64/build/src/interpreter.c:650
macro expansion at /home/jishnu/Downloads/julia/julia-1.6.2/share/julia/stdlib/v1.6/Artifacts/src/Artifacts.jl:680 [inlined]
find_artifact_dir at /home/jishnu/.julia/packages/JLLWrappers/bkwIo/src/wrapper_generators.jl:15
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
__init__ at /home/jishnu/.julia/packages/IntelOpenMP_jll/TUm6w/src/wrappers/x86_64-linux-gnu.jl:7
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
jl_module_run_initializer at /buildworker/worker/package_linux64/build/src/toplevel.c:72
_julia_init at /buildworker/worker/package_linux64/build/src/init.c:794
repl_entrypoint at /buildworker/worker/package_linux64/build/src/jlapi.c:696
main at /buildworker/worker/package_linux64/build/cli/loader_exe.c:51
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
_start at /home/jishnu/Downloads/julia/julia-1.6.2/bin/julia (unknown line)
[Info  - 4:42:15 pm] Connection to server got closed. Server will restart.
fatal: error thrown and no exception handler available.
InitError(mod=:IntelOpenMP_jll, error=ErrorException("Artifact "IntelOpenMP" was not installed correctly. Try `using Pkg; Pkg.instantiate()` to re-install all missing resources."))
error at ./error.jl:33
_artifact_str at /home/jishnu/Downloads/julia/julia-1.6.2/share/julia/stdlib/v1.6/Artifacts/src/Artifacts.jl:551
jfptr__artifact_str_54275 at /home/jishnu/Downloads/julia/julia-1.6.2/lib/julia/sys.so (unknown line)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
jl_f__call_latest at /buildworker/worker/package_linux64/build/src/builtins.c:714
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
do_apply at /buildworker/worker/package_linux64/build/src/builtins.c:670
#invokelatest#2 at ./essentials.jl:708
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
do_apply at /buildworker/worker/package_linux64/build/src/builtins.c:670
invokelatest at ./essentials.jl:706
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
do_call at /buildworker/worker/package_linux64/build/src/interpreter.c:115
eval_value at /buildworker/worker/package_linux64/build/src/interpreter.c:204
eval_stmt_value at /buildworker/worker/package_linux64/build/src/interpreter.c:155 [inlined]
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:562
jl_fptr_interpret_call at /buildworker/worker/package_linux64/build/src/interpreter.c:650
macro expansion at /home/jishnu/Downloads/julia/julia-1.6.2/share/julia/stdlib/v1.6/Artifacts/src/Artifacts.jl:680 [inlined]
find_artifact_dir at /home/jishnu/.julia/packages/JLLWrappers/bkwIo/src/wrapper_generators.jl:15
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
__init__ at /home/jishnu/.julia/packages/IntelOpenMP_jll/TUm6w/src/wrappers/x86_64-linux-gnu.jl:7
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2237 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2419
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
jl_module_run_initializer at /buildworker/worker/package_linux64/build/src/toplevel.c:72
_julia_init at /buildworker/worker/package_linux64/build/src/init.c:794
repl_entrypoint at /buildworker/worker/package_linux64/build/src/jlapi.c:696
main at /buildworker/worker/package_linux64/build/cli/loader_exe.c:51
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
_start at /home/jishnu/Downloads/julia/julia-1.6.2/bin/julia (unknown line)
[Error - 4:42:16 pm] Connection to server got closed. Server will not be restarted.

Unfortunately running

using Pkg; Pkg.instantiate()

in the main environment has no effect, and the error persists. Trying to add IntelOpenMP_jll also doens’t change anything, as the package seems to be already added.

This seems similar to this issue reported earlier, but I wonder if there’s a solution other than re-installing julia?

3 posts - 2 participants