# \#biochemistry

**URL:** https://discourse.julialang.org/tag/biochemistry/774.md

[Latest](https://discourse.julialang.org/latest.md) · [Categories](https://discourse.julialang.org/categories.md) · [Tags](https://discourse.julialang.org/tags.md)

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## [Research / Scientific Computing Collaboration – Julia Modelling for Subak Water Filtration](https://discourse.julialang.org/t/research-scientific-computing-collaboration-julia-modelling-for-subak-water-filtration/139586)

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**Author:** [@Fen\_Steckenborn](https://discourse.julialang.org/u/Fen_Steckenborn)\
**Replies:** 5\
**Last updated:** [September 26, 2026, 3:07pm UTC](https://discourse.julialang.org/t/research-scientific-computing-collaboration-julia-modelling-for-subak-water-filtration/139586 "2026-09-26T15:07:04Z")

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Location: Remote / Germany–Indonesia collaboration Project: Bali Ecofiltration – Subak Water Management, Bali, Indonesia Engagement: Research collaboration / contract / student or PhD project Start: Flexible / as soon…

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## [How is the performance of GraphNeuralNetworks.jl compared to PytorchGeometric?](https://discourse.julialang.org/t/how-is-the-performance-of-graphneuralnetworks-jl-compared-to-pytorchgeometric/97396)

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**Author:** [@DoktorMike](https://discourse.julialang.org/u/DoktorMike)\
**Replies:** 4\
**Last updated:** [April 13, 2023, 11:30am UTC](https://discourse.julialang.org/t/how-is-the-performance-of-graphneuralnetworks-jl-compared-to-pytorchgeometric/97396 "2023-04-13T11:30:45Z")

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I’ve been playing around with the excellent GraphNeuralNetworks.jl and am thinking about applying it to the biochemistry domain. Specifically within drug discovery. I was wondering if anyone has tried to benchmark speed …

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## [\[ANN\] ProtoSyn.jl v1.1: Molecular manipulation and simulation](https://discourse.julialang.org/t/ann-protosyn-jl-v1-1-molecular-manipulation-and-simulation/84158)

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**Author:** [@JosePereiraUA](https://discourse.julialang.org/u/JosePereiraUA)\
**Replies:** 2\
**Last updated:** [July 13, 2022, 12:39pm UTC](https://discourse.julialang.org/t/ann-protosyn-jl-v1-1-molecular-manipulation-and-simulation/84158 "2022-07-13T12:39:24Z")

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Hi everyone! I’m excited to officially share with you ProtoSyn.jl: a new tool for molecular simulation and general manipulation, with a strong emphasis on protein design. I’ve been showcasing ProtoSyn.jl for a while, but…

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## [Run Julia/Makie simulations in Blender](https://discourse.julialang.org/t/run-julia-makie-simulations-in-blender/72796)

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**Author:** [@Chimel](https://discourse.julialang.org/u/Chimel)\
**Replies:** 7\
**Last updated:** [December 20, 2021, 10:57pm UTC](https://discourse.julialang.org/t/run-julia-makie-simulations-in-blender/72796 "2021-12-20T22:57:41Z")

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Hello, Blender user here, new to Julia. I ran into a Tweet with a cool Protein simuation done with the BioMakie.jl Julia program, and wanted to know if it is possible to export the simulation data to use it in Blender;…

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## [\[ANN\] Escher.jl: Plot metabolic maps using Makie](https://discourse.julialang.org/t/ann-escher-jl-plot-metabolic-maps-using-makie/66927)

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**Author:** [@Elmo](https://discourse.julialang.org/u/Elmo)\
**Replies:** 0\
**Last updated:** [August 24, 2021, 5:08pm UTC](https://discourse.julialang.org/t/ann-escher-jl-plot-metabolic-maps-using-makie/66927 "2021-08-24T17:08:38Z")

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Escher.jl is a small recipe package that plots metabolic networks and their associated data using the awesome Makie. In short, metabolic maps, like those found on the website Escher, can be plotted from the comfort of Ju…