Hi all, What are good packages for survival analysis in Julia (i.e. working with truncated data, Kaplan-Meier estimator, Cox model and so on…)? So far I only found packages that seemed incomplete/abandoned (e.g.[ https://github.com/ContaTP/Survival.jl ] ( https://github.com/ContaTP/Survival.jl )) or th…

I was just wondering the same thing. I am taking survival analysis this semester. Looks like I will have to lean on R. https://www.openintro.org/download.php?file=survival_analysis_in_R&referrer

In the end I started working on it, although very slowly as I don’t have as much time as I’d like to dedicate to this project. Out of curiosity, what type of analysis would you need? Here’s a list of what I’m planning to implement: Kaplan-Meier estimate of the survival function Nelson-Aalen estima…

It is hard for me to know. I am just doing a grad level class - no research. If you are willing I would love to contribute. Let me know what you need.

Cool! I’ll try to work a bit more on the core structure of the thing and, as soon as the “skeleton” is clear I’ll open an issue with a “to do list”.

For anybody bumping into this old thread, there is now also Survival.jl in JuliaStats.

Hi. Yes, thanks for the update. Unfortunately Survival.jl does not include Accelerated Failure time models. Also, quite an important feature which is missing is left-censoring (or, equivalently, stratification). I tried to install AcceleratedFailure from the link and it seemed to load OK, but…

I went to the link but I could find any solved example. The docs are very minimal.

Appreciate this is over a year late but might be useful for anyone who stumbles across this thread like I did when searching the same question: just released SurvivalAnalysis.jl which is in active development and will hopefully cover above needs!

I really should publish my result, but I have done some survival analysis using Bayesian models and got dramatically different results from the Kaplan Meier curves my colleagues were plotting. I assumed it was something wrong with my model. But after weeks of debugging it turned out my model was cor…

[image] RaphaelS1: just released SurvivalAnalysis.jl Nice work! I recommend creating a separate package announcement under the “Package Announcements” category, so that your announcement reaches more people. :slight_smile:

Survival analysis in Julia

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RaphaelS1 September 2, 2022, 7:58am 15

Thanks for the tip! Done now!

Topic		Replies	Views
[ANN] SurvivalAnalysis.jl Package Announcements package , announcement	9	1912	September 11, 2022
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Survival analysis in Julia

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