I have a Julia project on my machine, and I then run the project on a different machine (cluster). To do that I copy the relevant files including the Project.toml, manifest.toml files. I included the package JLD2, and ran instantiate on the cluster machine. This did not work well. I got tome error…

What happens if you start Julia with LD_LIBRARY_PATH="" julia so that this environment variable is cleared before starting Julia?

Sure, it gives: $ df "${HOME}" Filesystem 1K-blocks Used Available Use% Mounted on gpfs_home_labs 104857600 61083648 43773952 59% /home/labs But isn’t there something special someone needs to do on the cluster? I know that everytime I log in to the cluster I need to load a module of juli…

[image] roi.holtzman: Sure, it gives: $ df "${HOME}" Filesystem 1K-blocks Used Available Use% Mounted on gpfs_home_labs 104857600 61083648 43773952 59% /home/labs Ugh, sorry, I forgot you need the -T flag to see the type: df -T "${HOME}" [image] roi.holtzman: But isn’t there …

the type is gpfs. It is tempting to try to install it myself, but I am afraid to do something wrong… I might just wait for someone to do it…

[image] roi.holtzman: the type is gpfs . That’s very likely the issue. Julia v1.6 should be able to deal with it (well, it should still show some warning messages, but it won’t be a fatal error, I believe). [image] roi.holtzman: It is tempting to try to install it myself, but I am afrai…

Thanks! I already addressed the cluster people asking them teach me how to install julia myself:) I hope that will solve the issue! I will update here as soon as I figure it out.

I have julia 1.6.1 installed on the cluster! I instantiated my project on the cluster and got errors (only attached those that failed): Precompiling project... ✗ Xorg_libxcb_jll ✗ Xorg_xcb_util_jll ✗ Xorg_libX11_jll ✗ Xorg_libXfixes_jll ✗ Xorg_libxkbfile_jll ✗ Xorg_libXrender_jll ✗ X…

[image] roi.holtzman: To see a full report either run `import Pkg; Pkg.precompile()` or load the packages I’d start from doing what the message suggests :slightly_smiling_face:

I tried, but I don’t get anything… julia> import Pkg; Pkg.precompile() Precompiling project... ✗ Xorg_libxcb_jll ✗ Xorg_xcb_util_jll ✗ Xorg_libX11_jll ✗ Xorg_libXfixes_jll ✗ Xorg_libxkbfile_jll ✗ Xorg_libXrender_jll ✗ Xorg_libXext_jll ✗ Xorg_xcb_util_image_jll ✗ Xorg_xcb_util_rend…

Try to load one of those packages, as suggested by the error message I quoted before already :slightly_smiling_face: note that in order to load a package it must be in the environment, so you may have to ]add it

It also does not give much information… (Ising2d) pkg> add Cairo_jll Updating registry at `~/.julia/registries/General` ┌ Warning: Some registries failed to update: │ — `~/.julia/registries/General` — registry dirty └ @ Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/std…

Problems with environment - Tree Hash Mismatch!

General Usage

giordano May 22, 2021, 10:44am 11

I’d start from doing what the message suggests

Tree Hash Mismatch while installing JLD on Julia 1.6.1

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Problems with environment - Tree Hash Mismatch!

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