# Problem with Juno at startup on Garuda linux

**URL:** <https://discourse.julialang.org/t/problem-with-juno-at-startup-on-garuda-linux/75300>\
**Category:** Juno\
**Created:** [January 27, 2022, 3:22pm UTC](https://discourse.julialang.org/t/problem-with-juno-at-startup-on-garuda-linux/75300 "2022-01-27T15:22:34Z")\
**Posts on this page:** 3\
**Page:** 1

<div class="post-metadata">

**Author:** ![benoitseron](https://avatars.discourse-cdn.com/v4/letter/b/85f322/32.png) [@benoitseron](https://discourse.julialang.org/u/benoitseron)\
**Post date:** [January 27, 2022, 3:22pm UTC](https://discourse.julialang.org/t/problem-with-juno-at-startup-on-garuda-linux/75300/1 "2022-01-27T15:22:34Z")

</div>

I installed Garuda Linux on my laptop and am trying to run Julia using atom as I used to.

I can use julia in a terminal but in Atom I have the following failure.

Upon pressing Enter to start a new session, everything seems fine and I can run a few commands, but a few seconds later I have the following error message

```julia
julia: /build/julia/src/julia-1.7.1/src/llvm-late-gc-lowering.cpp:562: std::pair<llvm::Value*, int> FindBaseValue(const State&, llvm::Value*, bool): Assertion `isa<LoadInst>(CurrentV) || isa<CallInst>(CurrentV) || isa<AtomicCmpXchgInst>(CurrentV) || isa<AtomicRMWInst>(CurrentV) || isa<Argument>(CurrentV) || isa<SelectInst>(CurrentV) || isa<PHINode>(CurrentV) || isa<AddrSpaceCastInst>(CurrentV) || isa<Constant>(CurrentV) || isa<AllocaInst>(CurrentV) || isa<InsertValueInst>(CurrentV) || isa<ExtractValueInst>(CurrentV) || isa<InsertElementInst>(CurrentV) || isa<ShuffleVectorInst>(CurrentV)' failed.

signal (6): Aborted
in expression starting at none:0
gsignal at /usr/bin/../lib/libc.so.6 (unknown line)
abort at /usr/bin/../lib/libc.so.6 (unknown line)
__assert_fail_base.cold at /usr/bin/../lib/libc.so.6 (unknown line)
__assert_fail at /usr/bin/../lib/libc.so.6 (unknown line)
unknown function (ip: 0x7f6282fb4274)
unknown function (ip: 0x7f6282fb8bb3)
unknown function (ip: 0x7f6282fb8dc0)
unknown function (ip: 0x7f6282fbf209)
unknown function (ip: 0x7f6282fc9f92)
_ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /usr/bin/../lib/julia/../libLLVM-13.so (unknown line)
_ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /usr/bin/../lib/julia/../libLLVM-13.so (unknown line)
_ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /usr/bin/../lib/julia/../libLLVM-13.so (unknown line)
unknown function (ip: 0x7f6282f9a83f)
_ZN4llvm3orc14IRCompileLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /usr/bin/../lib/julia/../libLLVM-13.so (unknown line)
_ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /usr/bin/../lib/julia/../libLLVM-13.so (unknown line)
_ZN4llvm3orc19MaterializationTask3runEv at /usr/bin/../lib/julia/../libLLVM-13.so (unknown line)
unknown function (ip: 0x7f627f0829f7)
_ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /usr/bin/../lib/julia/../libLLVM-13.so (unknown line)
_ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_EEEENSG_ISD_EENS_6detail12DenseMapPairISD_SI_EEEEEE at /usr/bin/../lib/julia/../libLLVM-13.so (unknown line)
unknown function (ip: 0x7f627f0a23f9)
_ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /usr/bin/../lib/julia/../libLLVM-13.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_EENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_EENSN_IS6_SV_EEEEEE at /usr/bin/../lib/julia/../libLLVM-13.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EERKNS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISK_EEEENSL_IS5_EENS_6detail12DenseMapPairIS5_SN_EEEEEE at /usr/bin/../lib/julia/../libLLVM-13.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolStringPtrENS0_11SymbolStateE at /usr/bin/../lib/julia/../libLLVM-13.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupENS_8ArrayRefIPNS0_8JITDylibEEENS0_15SymbolStringPtrENS0_11SymbolStateE at /usr/bin/../lib/julia/../libLLVM-13.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupENS_8ArrayRefIPNS0_8JITDylibEEENS_9StringRefENS0_11SymbolStateE at /usr/bin/../lib/julia/../libLLVM-13.so (unknown line)
unknown function (ip: 0x7f6282f96406)
unknown function (ip: 0x7f6282f981d4)
unknown function (ip: 0x7f6282f99334)
unknown function (ip: 0x7f6282f98c3b)
unknown function (ip: 0x7f6282f98c3b)
unknown function (ip: 0x7f628305a9a2)
unknown function (ip: 0x7f6282f93fff)
unknown function (ip: 0x7f6282f1b8dd)
jl_apply_generic at /usr/bin/../lib/julia/libjulia-internal.so.1 (unknown line)
#270 at /home/benoitseron/.julia/packages/Atom/BUIFZ/src/outline.jl:10
handlemsg at /home/benoitseron/.julia/packages/Atom/BUIFZ/src/comm.jl:169
unknown function (ip: 0x7f625bc1776e)
jl_f__call_latest at /usr/bin/../lib/julia/libjulia-internal.so.1 (unknown line)
unknown function (ip: 0x7f6282f256d1)
unknown function (ip: 0x7f626b854fd0)
unknown function (ip: 0x7f6282f256d1)
unknown function (ip: 0x7f626b6e95b7)
unknown function (ip: 0x7f6282f256d1)
#31 at ./task.jl:423
unknown function (ip: 0x7f625bbfc4ff)
unknown function (ip: 0x7f6282f30264)
Allocations: 40427226 (Pool: 40416840; Big: 10386); GC: 34

```

which then exists the session.

I tried what I could see in [[FAQ · Juno Documentation](https://docs.junolab.org/stable/man/faq/#FAQ)] which says changing the location of the binaries, but I was not able to enter anything that worked (I am not sure what to write there).

Does anyone have an idea of how to solve this?

---

<div class="post-metadata">

**Author:** ![Lucas\_Froguel](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/lucas_froguel/32/33285_2.png) [@Lucas\_Froguel](https://discourse.julialang.org/u/Lucas_Froguel)\
**Post date:** [January 29, 2022, 1:26am UTC](https://discourse.julialang.org/t/problem-with-juno-at-startup-on-garuda-linux/75300/2 "2022-01-29T01:26:46Z")

</div>

Hello! I am facing the exact same problem running julia on Manjaro. It works well in the command-line, but trying to use it on Atom yields the same output almost line-by-line. I have no idea so far, but if I do find out I’ll share here.

Edit: I have been trying some stuff to pin out the error and I have made some progress, though I am not sure if you have the same error. My error seems to be related to the loading of the Sundials library. Running any julia code that does not load `DifferentialEquations` and, thus, `Sundials` returns no error via the terminal. Altough this is progress, Atom seems to keep strugling even without loading this library.

```julia
ERROR: The following 2 direct dependencies failed to precompile:

Sundials [c3572dad-4567-51f8-b174-8c6c989267f4]

Failed to precompile Sundials [c3572dad-4567-51f8-b174-8c6c989267f4] to /home/lucas/.julia/compiled/v1.7/Sundials/jl_PGESDU.
ERROR: LoadError: InitError: could not load library "/home/lucas/.julia/artifacts/cb7fc2801ca0133a5bdea4bc4585d07c08284cfa/lib/libsundials_sunlinsollapackband.so"
libopenblas64_.so: cannot open shared object file: No such file or directory
Stacktrace:
 [1] macro expansion
   @ ~/.julia/packages/JLLWrappers/RYztT/src/products/library_generators.jl:54 [inlined]
 [2] __init__ ()
   @ Sundials_jll ~/.julia/packages/Sundials_jll/rXn1i/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:99
 [3] top-level scope (repeats 2 times)
   @ none:1
during initialization of module Sundials_jll
in expression starting at /home/lucas/.julia/packages/Sundials/m1EFu/src/Sundials.jl:3

DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa]

Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to /home/lucas/.julia/compiled/v1.7/DifferentialEquations/jl_jEOTCX.
ERROR: LoadError: InitError: could not load library "/home/lucas/.julia/artifacts/cb7fc2801ca0133a5bdea4bc4585d07c08284cfa/lib/libsundials_sunlinsollapackband.so"
libopenblas64_.so: cannot open shared object file: No such file or directory
Stacktrace:
 [1] macro expansion
   @ ~/.julia/packages/JLLWrappers/RYztT/src/products/library_generators.jl:54 [inlined]
 [2] __init__ ()
   @ Sundials_jll ~/.julia/packages/Sundials_jll/rXn1i/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:99
 [3] top-level scope (repeats 2 times)
   @ none:1
during initialization of module Sundials_jll
in expression starting at /home/lucas/.julia/packages/Sundials/m1EFu/src/Sundials.jl:3
ERROR: LoadError: Failed to precompile Sundials [c3572dad-4567-51f8-b174-8c6c989267f4] to /home/lucas/.julia/compiled/v1.7/Sundials/jl_dvQdJL.
Stacktrace:
 [1] top-level scope (repeats 2 times)
   @ none:1
in expression starting at /home/lucas/.julia/packages/DifferentialEquations/4jfQK/src/DifferentialEquations.jl:1

Stacktrace:
 [1] top-level scope

```

Perhaps a somewhat similar situation is happening to you, but with only this log you showed I cannot tell. Can you try running it without some packages via the terminal to try and find which one is giving you problems, if any at all?

---

<div class="post-metadata">

**Author:** ![Lucas\_Froguel](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/lucas_froguel/32/33285_2.png) [@Lucas\_Froguel](https://discourse.julialang.org/u/Lucas_Froguel)\
**Post date:** [January 29, 2022, 2:15am UTC](https://discourse.julialang.org/t/problem-with-juno-at-startup-on-garuda-linux/75300/3 "2022-01-29T02:15:25Z")

</div>

Ok, I think I got it. Not that I fully understand the reason, but I read [here](https://github.com/JuliaLinearAlgebra/Arpack.jl/issues/97) that the binaries in the standard arch repository tend to be buggy. Try running

```julia
sudo pacman -R julia

```

And, then,

```julia
yay julia-bin

```

to install [this](https://aur.archlinux.org/packages/julia-bin/) version. This solved all the problems I had.