Here are some options:
- GitHub - timholy/ANTsRegistration.jl: Convenience wrapper for image registration using the Advanced Normalization Tools : a wrapper for a popular MRI registration package
- GitHub - HolyLab/BlockRegistration.jl: Deformable image registration via shift-alignment of blocks : a pure-Julia package
- GitHub - HolyLab/RegisterWorkerApertures.jl: This package is separated from BlockRegistratonScheduler. : distributed- & GPU-computing wrapper around BlockRegistration.jl for motion correction in a time series
- GitHub - seung-lab/ImageRegistration.jl: Image registration toolbox for Julia : not maintained but might be interesting?