# Finding new packages and docs

**URL:** https://discourse.julialang.org/t/finding-new-packages-and-docs/10417
**Category:** Biology, Health, and Medicine
**Created:** [April 18, 2018, 4:16pm UTC](https://discourse.julialang.org/t/finding-new-packages-and-docs/10417 "2018-04-18T16:16:55Z")
**Posts on this page:** 12
**Page:** 1

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### Author: ![phaverty](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/phaverty/32/1424_2.png) [@phaverty](https://discourse.julialang.org/u/phaverty)
#### Post date: [April 18, 2018, 4:16pm UTC](https://discourse.julialang.org/t/finding-new-packages-and-docs/10417/1 "2018-04-18T16:16:55Z")

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It looks like the Bio.jl documentation and such is moving from [BioJulia · GitHub](https://github.com/BioJulia) to [https://biojulia.net/](https://biojulia.net/). I that right? Some cross-links and explanation would be very helpful. The “not for use with Julia 0.6” warning on the old site could lead a lazier user to give up on Bio.jl. I was very excited to see the newer packages at [biojulia.net](http://biojulia.net), but I only found that site by accident. Apologies in advance if I’m just late to the game.

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### Author: ![jgreener64](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/jgreener64/32/2483_2.png) [@jgreener64](https://discourse.julialang.org/u/jgreener64)
#### Post date: [April 18, 2018, 4:57pm UTC](https://discourse.julialang.org/t/finding-new-packages-and-docs/10417/2 "2018-04-18T16:57:23Z")

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The BioJulia website and docs are at [https://biojulia.net](https://biojulia.net) and the code is hosted on GitHub at [BioJulia · GitHub](https://github.com/BioJulia).

A while ago BioJulia decided to move from one large package (Bio.jl) to a series of separate packages (BioSequences.jl etc). Bio.jl would then re-export all the individual packages so a user could deal with a single dependency if they like.

The separate packages are generally stable on Julia v0.6 and are used commonly. The Bio.jl package isn’t yet stabilised, hence the warning.

I agree this situation is not immediately obvious, perhaps we could change the warning at [https://github.com/BioJulia/Bio.jl](https://github.com/BioJulia/Bio.jl) to indicate that the individual packages are stable on v0.6 and that BioJulia as a whole is very much an active project.

Hopefully we should have it in a more stable state soon; stabilisation of Julia after v1.0 will certainly help. Currently it is primarily @Ward9250 putting in the work on the organisational front, an often thankless task.

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### Author: ![phaverty](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/phaverty/32/1424_2.png) [@phaverty](https://discourse.julialang.org/u/phaverty)
#### Post date: [April 18, 2018, 5:44pm UTC](https://discourse.julialang.org/t/finding-new-packages-and-docs/10417/3 "2018-04-18T17:44:28Z")

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Thanks for the explanation. I’m glad to hear that things are still moving forward.

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### Author: ![djsegal](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/djsegal/32/13752_2.png) [@djsegal](https://discourse.julialang.org/u/djsegal)
#### Post date: [April 18, 2018, 7:03pm UTC](https://discourse.julialang.org/t/finding-new-packages-and-docs/10417/4 "2018-04-18T19:03:34Z")

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Also, these links might help you find some new packages?

- [https://juliaobserver.com/categories/Biology](https://juliaobserver.com/categories/Biology)
- [https://juliaobserver.com/searches?sort=hot&term=biology](https://juliaobserver.com/searches?sort=hot&term=biology)
- [https://juliaobserver.com/searches?sort=hot&term=bio](https://juliaobserver.com/searches?sort=hot&term=bio)

// sorry the search feature is a little weak ☹

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### Author: ![phaverty](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/phaverty/32/1424_2.png) [@phaverty](https://discourse.julialang.org/u/phaverty)
#### Post date: [April 18, 2018, 7:47pm UTC](https://discourse.julialang.org/t/finding-new-packages-and-docs/10417/5 "2018-04-18T19:47:29Z")

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Excellent. I always thought the julia package listing needed categories. Great to see that someone has done that!

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### Author: ![djsegal](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/djsegal/32/13752_2.png) [@djsegal](https://discourse.julialang.org/u/djsegal)
#### Post date: [April 18, 2018, 8:01pm UTC](https://discourse.julialang.org/t/finding-new-packages-and-docs/10417/6 "2018-04-18T20:01:38Z")

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Can’t take too much credit for that 😛

// it’s pulled from @svaksha’s [curated decibans](https://github.com/svaksha/Julia.jl/blob/master/Biology.md)

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### Author: ![svaksha](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/svaksha/32/881_2.png) [@svaksha](https://discourse.julialang.org/u/svaksha)
#### Post date: [April 19, 2018, 12:40pm UTC](https://discourse.julialang.org/t/finding-new-packages-and-docs/10417/7 "2018-04-19T12:40:10Z")

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Thanks for the credit @djsegal 😃

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### Author: ![jgreener64](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/jgreener64/32/2483_2.png) [@jgreener64](https://discourse.julialang.org/u/jgreener64)
#### Post date: [April 19, 2018, 5:41pm UTC](https://discourse.julialang.org/t/finding-new-packages-and-docs/10417/9 "2018-04-19T17:41:31Z")

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Hopefully this clears things up a bit on the readme, thanks for the input @phaverty.

[https://github.com/BioJulia/Bio.jl/pull/492](https://github.com/BioJulia/Bio.jl/pull/492)

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### Author: ![jonathanBieler](https://avatars.discourse-cdn.com/v4/letter/j/82dd89/32.png) [@jonathanBieler](https://discourse.julialang.org/u/jonathanBieler)
#### Post date: [April 19, 2018, 6:40pm UTC](https://discourse.julialang.org/t/finding-new-packages-and-docs/10417/10 "2018-04-19T18:40:25Z")

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It’s just anecdotal, but I’ve been using Bio.jl intensively on v.06 (only a subset of features though) and I’ve never add an issue with it. It’s very well made imo.

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### Author: ![kevbonham](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/kevbonham/32/216165_2.png) [@kevbonham](https://discourse.julialang.org/u/kevbonham)
#### Post date: [April 19, 2018, 8:12pm UTC](https://discourse.julialang.org/t/finding-new-packages-and-docs/10417/11 "2018-04-19T20:12:14Z")

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Yeah, I’m pretty sure the decision to shift to federated packages was made after 0.6, so it still works. It’s just that new developments are not happening in that repo - if you only look there you would not see all of the exciting new features 😃

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### Author: ![jgreener64](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/jgreener64/32/2483_2.png) [@jgreener64](https://discourse.julialang.org/u/jgreener64)
#### Post date: [April 20, 2018, 8:49am UTC](https://discourse.julialang.org/t/finding-new-packages-and-docs/10417/12 "2018-04-20T08:49:57Z")

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The decision to shift was made during the julia v0.5 → v0.6 transition, I don’t think it’s reliably stable on julia v0.6 (see [https://github.com/BioJulia/Bio.jl/issues/480](https://github.com/BioJulia/Bio.jl/issues/480) and [https://github.com/BioJulia/Bio.jl/issues/425](https://github.com/BioJulia/Bio.jl/issues/425)). If it is we should get the autobuild working and tag a release.

Still, great that it works for people! Not going to complain about that 😄.

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### Author: ![Ward9250](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/ward9250/32/42768_2.png) [@Ward9250](https://discourse.julialang.org/u/Ward9250)
#### Post date: [June 14, 2018, 3:52pm UTC](https://discourse.julialang.org/t/finding-new-packages-and-docs/10417/13 "2018-06-14T15:52:19Z")

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Bio.jl is getting some love and a release before JuliaCon.  
(So are some other packages too).

It’s going to get less confusing for new users and explorers as to exactly what Bio.jl is and where the other packages are.
