# Any (Computational) Neuroscientist Julia user here?

**URL:** <https://discourse.julialang.org/t/any-computational-neuroscientist-julia-user-here/1827>\
**Category:** Community\
**Tags:** proposal, announcement\
**Created:** [February 1, 2017, 7:34pm UTC](https://discourse.julialang.org/t/any-computational-neuroscientist-julia-user-here/1827 "2017-02-01T19:34:21Z")\
**Posts on this page:** 11\
**Page:** 2

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**Author:** ![grero](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/grero/32/109_2.png) [@grero](https://discourse.julialang.org/u/grero)\
**Post date:** [September 16, 2019, 3:31am UTC](https://discourse.julialang.org/t/any-computational-neuroscientist-julia-user-here/1827/21 "2019-09-16T03:31:18Z")

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I have quite a number of those hodge-podge packages on github: ) One that might be useful to someone is [https://github.com/grero/RippleTools.jl](https://github.com/grero/RippleTools.jl) which basically extracts data recorded from the Ripple data acquisition system ([https://rippleneuro.com](https://rippleneuro.com)).

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**Author:** ![tim.holy](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/tim.holy/32/52_2.png) [@tim.holy](https://discourse.julialang.org/u/tim.holy)\
**Post date:** [September 16, 2019, 10:35am UTC](https://discourse.julialang.org/t/any-computational-neuroscientist-julia-user-here/1827/22 "2019-09-16T10:35:57Z")

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If you set up such an organization, to help with the neuroanatomy part I’d move [https://github.com/timholy/AllenBrain.jl](https://github.com/timholy/AllenBrain.jl) there. (It’s “just for me” right now and hasn’t been updated to Julia 1.x, but all that could happen if there are other users willing to help out.)

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**Author:** ![Zach\_Christensen](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/zach_christensen/32/7220_2.png) [@Zach\_Christensen](https://discourse.julialang.org/u/Zach_Christensen)\
**Post date:** [September 16, 2019, 11:32am UTC](https://discourse.julialang.org/t/any-computational-neuroscientist-julia-user-here/1827/23 "2019-09-16T11:32:34Z")

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This is awesome! I’ve been thinking about adapting the allen brain atlas into a package for about a week now.

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**Author:** ![wsphillips](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/wsphillips/32/6777_2.png) [@wsphillips](https://discourse.julialang.org/u/wsphillips)\
**Post date:** [September 16, 2019, 6:23pm UTC](https://discourse.julialang.org/t/any-computational-neuroscientist-julia-user-here/1827/24 "2019-09-16T18:23:26Z")

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I have some LabJack API bindings that I suppose could be rolled into a usable package without too much effort.

Also, about a couple weeks away from being able to make a light-field microscopy simulation/deconvolution package public.

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**Author:** ![samo](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/samo/32/35398_2.png) [@samo](https://discourse.julialang.org/u/samo)\
**Post date:** [January 9, 2020, 9:57am UTC](https://discourse.julialang.org/t/any-computational-neuroscientist-julia-user-here/1827/25 "2020-01-09T09:57:10Z")

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Is anybody of you part of the Human Brain Project? Please have a look at [this thread](https://discourse.julialang.org/t/any-julia-users-in-the-human-brain-project/33143). Thanks!

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**Author:** ![mgiugliano](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/mgiugliano/32/5818_2.png) [@mgiugliano](https://discourse.julialang.org/u/mgiugliano)\
**Post date:** [January 9, 2020, 10:03am UTC](https://discourse.julialang.org/t/any-computational-neuroscientist-julia-user-here/1827/27 "2020-01-09T10:03:33Z")

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I am. Thanks for the pointer!

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**Author:** ![babaq](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/babaq/32/891_2.png) [@babaq](https://discourse.julialang.org/u/babaq)\
**Post date:** [January 13, 2020, 9:03pm UTC](https://discourse.julialang.org/t/any-computational-neuroscientist-julia-user-here/1827/28 "2020-01-13T21:03:45Z")

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We also have some tools([https://experica.org](https://experica.org)) for doing vision experiment and data exporting.  
The data analysis part are almost shifted to Julia, which deal with Ephys(Neuropixels), 2P and ISI.

A dedicated organization with some basic packages will definitely help a lot of people and encourage collaboration.

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**Author:** ![rveltz](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/rveltz/32/2707_2.png) [@rveltz](https://discourse.julialang.org/u/rveltz)\
**Post date:** [January 13, 2020, 11:12pm UTC](https://discourse.julialang.org/t/any-computational-neuroscientist-julia-user-here/1827/29 "2020-01-13T23:12:32Z")

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I am. Thank you for the link.

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**Author:** ![ChetanVardhan](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/chetanvardhan/32/222198_2.png) [@ChetanVardhan](https://discourse.julialang.org/u/ChetanVardhan)\
**Post date:** [December 15, 2020, 7:11pm UTC](https://discourse.julialang.org/t/any-computational-neuroscientist-julia-user-here/1827/30 "2020-12-15T19:11:00Z")

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Is there an organization already?

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**Author:** ![mgiugliano](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/mgiugliano/32/5818_2.png) [@mgiugliano](https://discourse.julialang.org/u/mgiugliano)\
**Post date:** [December 15, 2020, 7:34pm UTC](https://discourse.julialang.org/t/any-computational-neuroscientist-julia-user-here/1827/31 "2020-12-15T19:34:19Z")

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Not that I know. In Trieste (Italy), we launched a group - [https://julia-trieste.github.io](https://julia-trieste.github.io) - but it is not focused on Comp. Neuroscience. At Antwerpen University, where I worked from 2008 until 2019, I taught a class on Comp. Neuroscience using Julia and Jupyter.

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**Author:** ![tim.holy](https://sea2.discourse-cdn.com/julialang/user_avatar/discourse.julialang.org/tim.holy/32/52_2.png) [@tim.holy](https://discourse.julialang.org/u/tim.holy)\
**Post date:** [December 15, 2020, 10:04pm UTC](https://discourse.julialang.org/t/any-computational-neuroscientist-julia-user-here/1827/32 "2020-12-15T22:04:12Z")

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[https://github.com/JuliaNeuroscience](https://github.com/JuliaNeuroscience)

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