ANN - Towards a (Bio)Julia powered Genome Graphs framework

Ok, just to say some documentation is beginning to appear now over at Home · GenomeGraphs.jl

Also the package has been renamed from BioSequenceGraphs to GenomeGraphs.

The priority for me now is to get Arda’s GSoC work merged into master and to massage it into the WorkSpace framework. Then we will have de-Bruijn graph construction, bubble-popping and tip-cleaning graph clean-up transformations. Which is probably a nice point to cut a rough v0.1. From there we can implement more areas of the WorkSpace or make perf improvements.

I’m currently testing the basics with E.coli so expect some performance nasties with bigger datasets (especially during kmer counting), unless you’re on a chunky machine with RAM to spare.

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